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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
47860-47941
(-)
ZMP-ZTP
47204-47837 (-)
Cseg_0042
Lysine exporter protein (LYSE/YGGA)
Cseg_0042
Operon
DOOR ID:
691454
Cseg_0041,
Cseg_0042
View Structure
2
90027-90106
(+)
ZMP-ZTP
90132-91722 (+)
Cseg_0081
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Cseg_0081
Operon
DOOR ID:
691462
Cseg_0081,
Cseg_0082
View Structure
3
264035-264081
(+)
mini-ykkC
264104-264425 (+)
Cseg_0241
Cseg_0241
Single gene
DOOR ID:
2832574
Cseg_0241
View Structure
4
347068-347158
(+)
glycine
347308-348418 (+)
Cseg_0335
Glycine cleavage system T protein
Cseg_0335
Operon
DOOR ID:
691510
Cseg_0335,
Cseg_0336,
Cseg_0337,
Cseg_0338
View Structure
5
1506276-1506381
(+)
TPP
1506454-1508293 (+)
Cseg_1401
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Cseg_1401
Single gene
DOOR ID:
2833060
Cseg_1401
View Structure
6
1691138-1691330
(+)
cobalamin
1691359-1691998 (+)
Cseg_1584
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
Cseg_1584
Operon
DOOR ID:
691769
Cseg_1584,
Cseg_1585
View Structure
7
1950515-1950723
(-)
cobalamin
1949420-1950407 (-)
Cseg_1811
Cseg_1811
Operon
DOOR ID:
691812
Cseg_1810,
Cseg_1811
View Structure
8
2167936-2168126
(+)
cobalamin
2168267-2170217 (+)
Cseg_1992
TonB-dependent receptor
Cseg_1992
Operon
DOOR ID:
691855
Cseg_1992,
Cseg_1993,
Cseg_1994,
Cseg_1995,
Cseg_1996,
Cseg_1997,
Cseg_1998,
Cseg_1999,
Cseg_2000,
Cseg_2001
View Structure
9
3458538-3458676
(-)
yybP-ykoY
3457903-3458479 (-)
Cseg_3164
Cseg_3164
Operon
DOOR ID:
692106
Cseg_3162,
Cseg_3163,
Cseg_3164
View Structure
Genome:
Caulobacter segnis ATCC 21756
(
NC_014100.1
);
Phylum:
Alphaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014100.1";i:2;s:30:"Caulobacter segnis ATCC 21756 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1691138-1691330";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1691359-1691998";i:10;s:1:"+";i:11;s:9:"Cseg_1584";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:9:"Cseg_1584";i:14;s:6:"Operon";i:15;s:6:"691769";i:16;s:19:"Cseg_1584;Cseg_1585";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014100.1";i:2;s:30:"Caulobacter segnis ATCC 21756 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1950515-1950723";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1949420-1950407";i:10;s:1:"-";i:11;s:9:"Cseg_1811";i:12;s:0:"";i:13;s:9:"Cseg_1811";i:14;s:6:"Operon";i:15;s:6:"691812";i:16;s:19:"Cseg_1810;Cseg_1811";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014100.1";i:2;s:30:"Caulobacter segnis ATCC 21756 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2167936-2168126";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2168267-2170217";i:10;s:1:"+";i:11;s:9:"Cseg_1992";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Cseg_1992";i:14;s:6:"Operon";i:15;s:6:"691855";i:16;s:99:"Cseg_1992;Cseg_1993;Cseg_1994;Cseg_1995;Cseg_1996;Cseg_1997;Cseg_1998;Cseg_1999;Cseg_2000;Cseg_2001";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014100.1";i:2;s:30:"Caulobacter segnis ATCC 21756 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3458538-3458676";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3457903-3458479";i:10;s:1:"-";i:11;s:9:"Cseg_3164";i:12;s:0:"";i:13;s:9:"Cseg_3164";i:14;s:6:"Operon";i:15;s:6:"692106";i:16;s:29:"Cseg_3162;Cseg_3163;Cseg_3164";i:17;s:0:"";i:18;s:15:"View Structure ";}}
