Genome: Rhodobacter capsulatus SB 1003 (NC_014034.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 172514-172734 (+)cobalamin173035-174538 (+)RCAP_rcc00152

Peptide ABC transporter; periplasmic peptide-binding protein		RCAP_rcc00152Operon

DOOR ID: 689092		RCAP_rcc00152,
RCAP_rcc00153,
RCAP_rcc00154,
RCAP_rcc00155		 View Structure
2 1192313-1192361 (+)SAM-SAH1192368-1193535 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		RCAP_rcc01120Operon

DOOR ID: 689294		RCAP_rcc01116,
RCAP_rcc01117,
RCAP_rcc01118 (corC),
RCAP_rcc01119 (lnt),
RCAP_rcc01120 (metK)		 View Structure
3 1212722-1212812 (+)glycine1212948-1214058 (+)gcvT1

Glycine cleavage T protein-1 (0)		RCAP_rcc01142Operon

DOOR ID: 689300		RCAP_rcc01142 (gcvT1),
RCAP_rcc01143 (gcvH),
RCAP_rcc01144 (gcvP)		 View Structure
4 2197114-2197337 (-)cobalamin2196379-2197048 (-)RCAP_rcc02037

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		RCAP_rcc02037Operon

DOOR ID: 689481		RCAP_rcc02032 (cobB),
RCAP_rcc02033 (cobZ),
RCAP_rcc02034 (cbiO2),
RCAP_rcc02035 (cbiQ2),
RCAP_rcc02036 (cbiN),
RCAP_rcc02037		 View Structure
5 2208767-2208990 (-)cobalamin2208310-2208688 (-)RCAP_rcc02049

RCAP_rcc02049Operon

DOOR ID: 689483		RCAP_rcc02044 (cobJ),
RCAP_rcc02045 (cobI),
RCAP_rcc02046 (cobH),
RCAP_rcc02047 (cobN),
RCAP_rcc02048 (cobW),
RCAP_rcc02049		 View Structure
6 2274440-2274657 (+)cobalamin2274853-2275627 (+)RCAP_rcc02116

Iron siderophore/cobalamin ABC transporter; ATP-binding protein 		RCAP_rcc02116Single gene

DOOR ID: 2828761		RCAP_rcc02116 View Structure
7 2547288-2547483 (+)cobalamin2547786-2548572 (+)exbB

Biopolymer transport protein ExbB		RCAP_rcc02375Operon

DOOR ID: 689549		RCAP_rcc02375 (exbB),
RCAP_rcc02376 (exbD1),
RCAP_rcc02377 (tonB)		 View Structure
8 2817831-2818018 (+)cobalamin2818101-2818446 (+)RCAP_rcc02626

RCAP_rcc02626Single gene

DOOR ID: 2828932		RCAP_rcc02626 View Structure
9 2889497-2889599 (+)TPP2889638-2890628 (+)thiB

Thiamine ABC transporter; periplasmic thiamin-binding protein		RCAP_rcc02697Operon

DOOR ID: 689616		RCAP_rcc02697 (thiB),
RCAP_rcc02698 (thiP),
RCAP_rcc02699 (thiQ)		 View Structure
10 3040751-3040846 (+)TPP3040892-3041699 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		RCAP_rcc02850Operon

DOOR ID: 689651		RCAP_rcc02850 (thiM),
RCAP_rcc02851 (thiE),
RCAP_rcc02852 (thiD),
RCAP_rcc02853,
RCAP_rcc02854,
RCAP_rcc02855		 View Structure
11 3533284-3533488 (-)cobalamin3532393-3532981 (-)RCAP_rcc03340

Conserved domain protein		RCAP_rcc03340Operon

DOOR ID: 689751		RCAP_rcc03339,
RCAP_rcc03340		 View Structure
12 3533673-3533859 (+)cobalamin3533951-3535982 (+)nrdD

Anaerobic ribonucleoside-triphosphate reductase 		RCAP_rcc03342Operon

DOOR ID: 689752		RCAP_rcc03342 (nrdD),
RCAP_rcc03343,
RCAP_rcc03344		 View Structure
13 3544683-3544880 (-)cobalamin3543391-3544627 (-)RCAP_rcc03351

Rieske (2Fe-2S) domain protein 		RCAP_rcc03351Operon

DOOR ID: 689754		RCAP_rcc03350,
RCAP_rcc03351		 View Structure
14 3552425-3552612 (-)cobalamin3551905-3552253 (-)RCAP_rcc03356

RCAP_rcc03356Single gene

DOOR ID: 2829160		RCAP_rcc03356 View Structure
15 3552727-3552890 (+)cobalamin3553043-3553940 (+)RCAP_rcc03357

RCAP_rcc03357Single gene

DOOR ID: 2829161		RCAP_rcc03357 View Structure
16 3553960-3554155 (+)cobalamin3554279-3556130 (+)RCAP_rcc03358

TonB-dependent receptor		RCAP_rcc03358Operon

DOOR ID: 689757		RCAP_rcc03358,
RCAP_rcc03359,
RCAP_rcc03360,
RCAP_rcc03361,
RCAP_rcc03362 (cbiZ)		 View Structure