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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
120191-120320
(-)
yybP-ykoY
119569-120145 (-)
XALc_0089
Putative manganese efflux pump MntP
XALc_0089
Single gene
DOOR ID:
2754853
XALc_0089
View Structure
2
204493-204712
(+)
cobalamin
204891-207303 (+)
nrdA
Ribonucleoside-diphosphate reductase
XALc_0161
Operon
DOOR ID:
650243
XALc_0161
(nrdA)
,
XALc_0162
(nrdB)
,
XALc_0163
View Structure
3
217845-218098
(-)
cobalamin
215342-217634 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
XALc_0169
Single gene
DOOR ID:
2754889
XALc_0169
(metE)
View Structure
4
707468-707570
(+)
glycine
708084-709377 (+)
purA
Adenylosuccinate synthetase (AMPSase) (AdSS) (IMP--aspartate ligase)
XALc_0657
Single gene
DOOR ID:
2755071
XALc_0657
(purA)
View Structure
5
842197-842297
(+)
TPP
842406-844290 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XALc_0761
Single gene
DOOR ID:
2755117
XALc_0761
(thiC)
View Structure
6
996181-996288
(+)
glycine
996386-999290 (+)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XALc_0878
Single gene
DOOR ID:
2755172
XALc_0878
(gcvP)
View Structure
7
1682310-1682380
(+)
fluoride
1682460-1683804 (+)
XALc_1455
Putative chloride channel protein
XALc_1455
Single gene
DOOR ID:
2755383
XALc_1455
View Structure
8
2581013-2581131
(-)
SAM
2579895-2580942 (-)
XALc_2186
Putative homoserine o-acetyltransferase protein
XALc_2186
Operon
DOOR ID:
650652
XALc_2184,
XALc_2185
(metC)
,
XALc_2186
View Structure
9
3226714-3226937
(+)
cobalamin
3227050-3228922 (+)
XALc_2726
Putative tonb-dependent outer membrane receptor protein
XALc_2726
Single gene
DOOR ID:
2755898
XALc_2726
View Structure
10
3307533-3307633
(+)
SAH
3307667-3309113 (+)
XALc_2790
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XALc_2790
Single gene
DOOR ID:
2755927
XALc_2790
View Structure
11
3362618-3362777
(-)
FMN
3361940-3362540 (-)
RibC
Putative riboflavin synthase; alpha subunit protein
XALc_2839
Single gene
DOOR ID:
2755946
XALc_2839
(RibC)
View Structure
Genome:
Xanthomonas albilineans GPE PC73
(
NC_013722.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"120191-120320";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"119569-120145";i:10;s:1:"-";i:11;s:9:"XALc_0089";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"XALc_0089";i:14;s:11:"Single gene";i:15;s:7:"2754853";i:16;s:9:"XALc_0089";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"204493-204712";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"204891-207303";i:10;s:1:"+";i:11;s:4:"nrdA";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"XALc_0161";i:14;s:6:"Operon";i:15;s:6:"650243";i:16;s:41:"XALc_0161(nrdA);XALc_0162(nrdB);XALc_0163";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"217845-218098";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"215342-217634";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"XALc_0169";i:14;s:11:"Single gene";i:15;s:7:"2754889";i:16;s:15:"XALc_0169(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"707468-707570";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"708084-709377";i:10;s:1:"+";i:11;s:4:"purA";i:12;s:69:"Adenylosuccinate synthetase (AMPSase) (AdSS) (IMP--aspartate ligase)";i:13;s:9:"XALc_0657";i:14;s:11:"Single gene";i:15;s:7:"2755071";i:16;s:15:"XALc_0657(purA)";i:17;s:47:"'de novo' AMP biosynthetic process [GO:0044208]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"842197-842297";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"842406-844290";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"XALc_0761";i:14;s:11:"Single gene";i:15;s:7:"2755117";i:16;s:15:"XALc_0761(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"996181-996288";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"996386-999290";i:10;s:1:"+";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"XALc_0878";i:14;s:11:"Single gene";i:15;s:7:"2755172";i:16;s:15:"XALc_0878(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1682310-1682380";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1682460-1683804";i:10;s:1:"+";i:11;s:9:"XALc_1455";i:12;s:33:"Putative chloride channel protein";i:13;s:9:"XALc_1455";i:14;s:11:"Single gene";i:15;s:7:"2755383";i:16;s:9:"XALc_1455";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2581013-2581131";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2579895-2580942";i:10;s:1:"-";i:11;s:9:"XALc_2186";i:12;s:47:"Putative homoserine o-acetyltransferase protein";i:13;s:9:"XALc_2186";i:14;s:6:"Operon";i:15;s:6:"650652";i:16;s:35:"XALc_2184;XALc_2185(metC);XALc_2186";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3226714-3226937";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3227050-3228922";i:10;s:1:"+";i:11;s:9:"XALc_2726";i:12;s:55:"Putative tonb-dependent outer membrane receptor protein";i:13;s:9:"XALc_2726";i:14;s:11:"Single gene";i:15;s:7:"2755898";i:16;s:9:"XALc_2726";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3307533-3307633";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3307667-3309113";i:10;s:1:"+";i:11;s:9:"XALc_2790";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"XALc_2790";i:14;s:11:"Single gene";i:15;s:7:"2755927";i:16;s:9:"XALc_2790";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013722.1";i:2;s:33:"Xanthomonas albilineans GPE PC73 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3362618-3362777";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3361940-3362540";i:10;s:1:"-";i:11;s:4:"RibC";i:12;s:51:"Putative riboflavin synthase; alpha subunit protein";i:13;s:9:"XALc_2839";i:14;s:11:"Single gene";i:15;s:7:"2755946";i:16;s:15:"XALc_2839(RibC)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
