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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
185929-186031
(-)
TPP
185396-185591 (-)
thiS
Thiamine biosynthesis protein ThiS
BDP_0149
Single gene
DOOR ID:
2747758
BDP_0149
(thiS)
View Structure
2
1487496-1487601
(-)
TPP
1486856-1487468 (-)
BDP_1328
Permease protein of ABC transporter system
BDP_1328
Single gene
DOOR ID:
2748247
BDP_1328
View Structure
3
1502170-1502322
(+)
FMN
1502327-1502930 (+)
BDP_1337
Riboflavin transporter
BDP_1337
Operon
DOOR ID:
647675
BDP_1337,
BDP_1338,
BDP_1339
View Structure
4
1507940-1508045
(-)
TPP
1507186-1507939 (-)
tenA
Aminopyrimidine aminohydrolase
BDP_1341
Single gene
DOOR ID:
2748254
BDP_1341
(tenA)
View Structure
5
1790948-1791060
(+)
TPP
1792191-1794702 (+)
thiC
Multifunctional fusion protein [Includes: Phosphomethylpyrimidine synthase (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)]
BDP_1598
Operon
DOOR ID:
647717
BDP_1598
(thiC)
,
BDP_1599
(thiD)
View Structure
6
2445426-2445528
(-)
TPP
2444662-2445364 (-)
tenA
Aminopyrimidine aminohydrolase
BDP_2140
Single gene
DOOR ID:
2748624
BDP_2140
(tenA)
View Structure
Genome:
Bifidobacterium dentium Bd1
(
NC_013714.1
);
Phylum:
Actinobacteria
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