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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
26638-26819
(+)
cobalamin
26970-27912 (+)
Lebu_0023
Binding-protein-dependent transport systems inner membrane component
Lebu_0023
Operon
DOOR ID:
611439
Lebu_0023,
Lebu_0024,
Lebu_0025,
Lebu_0026,
Lebu_0027
View Structure
2
61068-61204
(+)
cobalamin
61359-62982 (+)
Lebu_0055
Nickel ABC transporter; periplasmic nickel-binding protein (4)
Lebu_0055
Operon
DOOR ID:
611445
Lebu_0055,
Lebu_0056,
Lebu_0057,
Lebu_0058,
Lebu_0059
View Structure
3
89582-89766
(+)
cobalamin
89959-90667 (+)
Lebu_0091
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
Lebu_0091
Operon
DOOR ID:
611449
Lebu_0091,
Lebu_0092,
Lebu_0093,
Lebu_0094,
Lebu_0095
View Structure
4
832217-832315
(-)
SAM
830953-832108 (-)
Lebu_0761
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Lebu_0761
Single gene
DOOR ID:
2676767
Lebu_0761
View Structure
5
1437569-1437744
(-)
lysine
1435774-1437085 (-)
Lebu_1361
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
Lebu_1361
Operon
DOOR ID:
611712
Lebu_1359,
Lebu_1360,
Lebu_1361
View Structure
6
1471295-1471392
(-)
glycine
1469756-1471106 (-)
Lebu_1385
Amino acid carrier protein
Lebu_1385
Single gene
DOOR ID:
2676968
Lebu_1385
View Structure
7
1650990-1651127
(-)
FMN
1650237-1650702 (-)
Lebu_1561
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Lebu_1561
Operon
DOOR ID:
611755
Lebu_1560,
Lebu_1561
View Structure
8
1721847-1721937
(-)
TPP
1721378-1721690 (-)
Lebu_1632
Lebu_1632
Operon
DOOR ID:
611772
Lebu_1629,
Lebu_1630,
Lebu_1631,
Lebu_1632
View Structure
9
2214429-2214604
(+)
glmS
2214636-2216466 (+)
Lebu_2079
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Lebu_2079
Operon
DOOR ID:
611868
Lebu_2079,
Lebu_2080,
Lebu_2081
View Structure
Genome:
Leptotrichia buccalis C-1013-b
(
NC_013192.1
);
Phylum:
Fusobacteriia
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periplasmic nickel-binding protein (4)";i:13;s:9:"Lebu_0055";i:14;s:6:"Operon";i:15;s:6:"611445";i:16;s:49:"Lebu_0055;Lebu_0056;Lebu_0057;Lebu_0058;Lebu_0059";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013192.1";i:2;s:31:"Leptotrichia buccalis C-1013-b ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:11:"89582-89766";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"89959-90667";i:10;s:1:"+";i:11;s:9:"Lebu_0091";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:9:"Lebu_0091";i:14;s:6:"Operon";i:15;s:6:"611449";i:16;s:49:"Lebu_0091;Lebu_0092;Lebu_0093;Lebu_0094;Lebu_0095";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013192.1";i:2;s:31:"Leptotrichia buccalis C-1013-b ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:13:"832217-832315";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"830953-832108";i:10;s:1:"-";i:11;s:9:"Lebu_0761";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"Lebu_0761";i:14;s:11:"Single gene";i:15;s:7:"2676767";i:16;s:9:"Lebu_0761";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013192.1";i:2;s:31:"Leptotrichia buccalis C-1013-b ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1437569-1437744";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1435774-1437085";i:10;s:1:"-";i:11;s:9:"Lebu_1361";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"Lebu_1361";i:14;s:6:"Operon";i:15;s:6:"611712";i:16;s:29:"Lebu_1359;Lebu_1360;Lebu_1361";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013192.1";i:2;s:31:"Leptotrichia buccalis C-1013-b ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1471295-1471392";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1469756-1471106";i:10;s:1:"-";i:11;s:9:"Lebu_1385";i:12;s:26:"Amino acid carrier protein";i:13;s:9:"Lebu_1385";i:14;s:11:"Single gene";i:15;s:7:"2676968";i:16;s:9:"Lebu_1385";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013192.1";i:2;s:31:"Leptotrichia buccalis C-1013-b ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1650990-1651127";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1650237-1650702";i:10;s:1:"-";i:11;s:9:"Lebu_1561";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:9:"Lebu_1561";i:14;s:6:"Operon";i:15;s:6:"611755";i:16;s:19:"Lebu_1560;Lebu_1561";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013192.1";i:2;s:31:"Leptotrichia buccalis C-1013-b ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1721847-1721937";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1721378-1721690";i:10;s:1:"-";i:11;s:9:"Lebu_1632";i:12;s:0:"";i:13;s:9:"Lebu_1632";i:14;s:6:"Operon";i:15;s:6:"611772";i:16;s:39:"Lebu_1629;Lebu_1630;Lebu_1631;Lebu_1632";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013192.1";i:2;s:31:"Leptotrichia buccalis C-1013-b ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"2214429-2214604";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2214636-2216466";i:10;s:1:"+";i:11;s:9:"Lebu_2079";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Lebu_2079";i:14;s:6:"Operon";i:15;s:6:"611868";i:16;s:29:"Lebu_2079;Lebu_2080;Lebu_2081";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}}
