Genome: Photorhabdus asymbiotica (NC_012962.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 430585-430710 (-)TPP428538-430476 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 588792
PAU_00389 (thiH),
PAU_00390 (thiG),
PAU_00391 (thiS),
PAU_00392 (thiF),
PAU_00393 (thiE),
PAU_00394 (thiC)
View Structure
2 655421-655525 (-)TPP654333-655347 (-)tbpA

Thiamine-binding periplasmic protein

DOOR ID: 588835
PAU_00576 (thiQ),
PAU_00577c (thiP),
PAU_00578 (tbpA)
View Structure
3 1229669-1229840 (+)ykoK1229914-1230988 (+)PAU_01085

Similar to magnesium transport protein mgte
PAU_01085Single gene

DOOR ID: 2628213
PAU_01085 View Structure
4 1830371-1830558 (+)cobalamin1830658-1832041 (+)cbiA

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)

DOOR ID: 589039
PAU_01601 (cbiA),
PAU_01602 (cobD),
PAU_01603 (cbiC),
PAU_01604 (cbiD),
PAU_01605 (cbiE),
PAU_01606 (cbiT),
PAU_01607 (cbiF),
PAU_01608 (cbiG),
PAU_01609 (cbiH),
PAU_01610 (cbiJ),
PAU_01611 (cbiK),
PAU_01612 (cbiL),
PAU_01613 (cobQ),
PAU_01614 (cobU),
PAU_01615 (cobS)
View Structure
5 1980228-1980320 (+)TPP1980365-1981163 (+)thiD

Phosphomethylpyrimidine kinase (Hmp-phosphate kinase)
PAU_01757Single gene

DOOR ID: 2628496
PAU_01757 (thiD) View Structure
6 2067591-2067781 (-)yybP-ykoY2067002-2067584 (-)yebN

Putative manganese efflux pump MntP
PAU_01833Single gene

DOOR ID: 2628523
PAU_01833 (yebN) View Structure
7 3392693-3392838 (-)MOCO3391208-3391685 (-)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)

DOOR ID: 589285
PAU_02931 (moaE),
PAU_02932 (moaD),
PAU_02933 (moaC),
PAU_02934 (moaA)
View Structure
8 4142348-4142516 (-)FMN4141538-4142198 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
PAU_03536Single gene

DOOR ID: 2629219
PAU_03536 (ribB) View Structure
9 4355209-4355255 (-)mini-ykkC4354872-4355187 (-)sugE

PAU_03752Single gene

DOOR ID: 2629307
PAU_03752 (sugE) View Structure