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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
359887-359963
(+)
c-di-GMP-I
360066-360666 (+)
GM21_0290
Uncharacterized protein
GM21_0290
single gene
DOOR ID:
2621404
GM21_0290
View Structure
2
378592-378668
(+)
c-di-GMP-I
379147-379339 (+)
GM21_0308
Uncharacterized protein
GM21_0308
single gene
DOOR ID:
2621410
GM21_0308
View Structure
3
411035-411136
(-)
SAM
409831-410962 (-)
GM21_0329
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
GM21_0329
Single gene
DOOR ID:
2621421
GM21_0329
View Structure
4
512997-513076
(+)
c-di-GMP-I
513665-513827 (+)
GM21_0434
Uncharacterized protein
GM21_0434
single gene
DOOR ID:
2621462
GM21_0434
View Structure
5
513222-513301
(+)
c-di-GMP-I
513665-513827 (+)
GM21_0434
Uncharacterized protein
GM21_0434
single gene
DOOR ID:
2621462
GM21_0434
View Structure
6
513439-513518
(+)
c-di-GMP-I
513665-513827 (+)
GM21_0434
Uncharacterized protein
GM21_0434
single gene
DOOR ID:
2621462
GM21_0434
View Structure
7
513975-514054
(+)
c-di-GMP-I
514166-522827 (+)
GM21_0435
Conserved repeat domain protein
GM21_0435
single gene
DOOR ID:
2621463
GM21_0435
View Structure
8
675213-675289
(-)
c-di-GMP-I
673305-674928 (-)
GM21_0550
PAS/PAC sensor hybrid histidine kinase
GM21_0550
single gene
DOOR ID:
2621509
GM21_0550
View Structure
9
916242-916307
(+)
SAH
916379-916784 (+)
GM21_0768
Nucleotidyltransferase substrate binding protein; HI0074 family
GM21_0768
Operon
DOOR ID:
584894
GM21_0768,
GM21_0769,
GM21_0770
View Structure
10
1448204-1448280
(+)
c-di-GMP-I
1448603-1450253 (+)
GM21_1242
Uncharacterized protein
GM21_1242
single gene
DOOR ID:
2621795
GM21_1242
View Structure
11
1448421-1448497
(+)
c-di-GMP-I
1448603-1450253 (+)
GM21_1242
Uncharacterized protein
GM21_1242
single gene
DOOR ID:
2621795
GM21_1242
View Structure
12
1725684-1725760
(-)
c-di-GMP-I
1725291-1725582 (-)
GM21_1469
Uncharacterized protein
GM21_1469
operon
DOOR ID:
585038
GM21_1468,
GM21_1469
View Structure
13
1874314-1874434
(+)
MOCO
1875059-1875248 (+)
GM21_1608
GM21_1608
Single gene
DOOR ID:
2621967
GM21_1608
View Structure
14
1874544-1874663
(+)
MOCO
1875059-1875248 (+)
GM21_1608
GM21_1608
Single gene
DOOR ID:
2621967
GM21_1608
View Structure
15
1874769-1874890
(+)
MOCO
1875059-1875248 (+)
GM21_1608
GM21_1608
Single gene
DOOR ID:
2621967
GM21_1608
View Structure
16
2163539-2163616
(+)
c-di-GMP-I
2163725-2164034 (+)
GM21_1860
Uncharacterized protein
GM21_1860
single gene
DOOR ID:
2622052
GM21_1860
View Structure
17
2260394-2260514
(-)
MOCO
2259107-2260319 (-)
GM21_1950
Molybdenum cofactor synthesis domain protein
GM21_1950
Operon
DOOR ID:
585138
GM21_1949,
GM21_1950
View Structure
18
2331122-2331226
(-)
SAM
2329898-2331047 (-)
GM21_2009
Cystathionine gamma-lyase
GM21_2009
Operon
DOOR ID:
585149
GM21_2008,
GM21_2009
View Structure
19
2404320-2404396
(+)
c-di-GMP-I
2404481-2405150 (+)
GM21_2073
Uncharacterized protein
GM21_2073
single gene
DOOR ID:
2622146
GM21_2073
View Structure
20
2709731-2709807
(+)
c-di-GMP-I
2710085-2711414 (+)
GM21_2329
Cytochrome c family protein
GM21_2329
single gene
DOOR ID:
2622249
GM21_2329
View Structure
21
2709923-2709998
(+)
c-di-GMP-I
2710085-2711414 (+)
GM21_2329
Cytochrome c family protein
GM21_2329
single gene
DOOR ID:
2622249
GM21_2329
View Structure
22
2863057-2863132
(-)
c-di-GMP-I
2859324-2862984 (-)
GM21_2451
Fibronectin type III domain protein
GM21_2451
single gene
DOOR ID:
2622287
GM21_2451
View Structure
23
2863498-2863574
(-)
c-di-GMP-I
2859324-2862984 (-)
GM21_2451
Fibronectin type III domain protein
GM21_2451
single gene
DOOR ID:
2622287
GM21_2451
View Structure
24
3411126-3411247
(+)
MOCO
3411279-3413010 (+)
GM21_2933
Aldehyde ferredoxin oxidoreductase
GM21_2933
Single gene
DOOR ID:
2622439
GM21_2933
View Structure
25
3585568-3585644
(-)
c-di-GMP-I
3584831-3585476 (-)
GM21_3095
Uncharacterized protein
GM21_3095
single gene
DOOR ID:
2622505
GM21_3095
View Structure
26
3691135-3691211
(+)
c-di-GMP-I
3691343-3692918 (+)
GM21_3181
Fibronectin type III domain protein
GM21_3181
single gene
DOOR ID:
2622545
GM21_3181
View Structure
27
4071218-4071319
(+)
TPP
4071599-4073054 (+)
GM21_3528
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
GM21_3528
Single gene
DOOR ID:
2622657
GM21_3528
View Structure
28
4485551-4485732
(-)
cobalamin
4484934-4485459 (-)
GM21_3898
Bifunctional adenosylcobalamin biosynthesis protein (2)
GM21_3898
Single gene
DOOR ID:
2622772
GM21_3898
View Structure
29
4660637-4660713
(+)
c-di-GMP-I
4661096-4662326 (+)
GM21_4081
ErfK/YbiS/YcfS/YnhG family protein
GM21_4081
single gene
DOOR ID:
2622832
GM21_4081
View Structure
30
4660821-4660897
(+)
c-di-GMP-I
4661096-4662326 (+)
GM21_4081
ErfK/YbiS/YcfS/YnhG family protein
GM21_4081
single gene
DOOR ID:
2622832
GM21_4081
View Structure
Genome:
Geobacter sp. M21
(
NC_012918.1
);
Phylum:
delta/epsilon subdivisions
a:31:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"359887-359963";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"360066-360666";i:10;s:1:"+";i:11;s:9:"GM21_0290";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_0290";i:14;s:11:"single gene";i:15;s:7:"2621404";i:16;s:9:"GM21_0290";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"378592-378668";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"379147-379339";i:10;s:1:"+";i:11;s:9:"GM21_0308";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_0308";i:14;s:11:"single gene";i:15;s:7:"2621410";i:16;s:9:"GM21_0308";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"411035-411136";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"409831-410962";i:10;s:1:"-";i:11;s:9:"GM21_0329";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"GM21_0329";i:14;s:11:"Single gene";i:15;s:7:"2621421";i:16;s:9:"GM21_0329";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"512997-513076";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:13:"513665-513827";i:10;s:1:"+";i:11;s:9:"GM21_0434";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_0434";i:14;s:11:"single gene";i:15;s:7:"2621462";i:16;s:9:"GM21_0434";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"513222-513301";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:13:"513665-513827";i:10;s:1:"+";i:11;s:9:"GM21_0434";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_0434";i:14;s:11:"single gene";i:15;s:7:"2621462";i:16;s:9:"GM21_0434";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"513439-513518";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:13:"513665-513827";i:10;s:1:"+";i:11;s:9:"GM21_0434";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_0434";i:14;s:11:"single gene";i:15;s:7:"2621462";i:16;s:9:"GM21_0434";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"513975-514054";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"514166-522827";i:10;s:1:"+";i:11;s:9:"GM21_0435";i:12;s:31:"Conserved repeat domain protein";i:13;s:9:"GM21_0435";i:14;s:11:"single gene";i:15;s:7:"2621463";i:16;s:9:"GM21_0435";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"675213-675289";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"673305-674928";i:10;s:1:"-";i:11;s:9:"GM21_0550";i:12;s:38:"PAS/PAC sensor hybrid histidine kinase";i:13;s:9:"GM21_0550";i:14;s:11:"single gene";i:15;s:7:"2621509";i:16;s:9:"GM21_0550";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"916242-916307";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"916379-916784";i:10;s:1:"+";i:11;s:9:"GM21_0768";i:12;s:63:"Nucleotidyltransferase substrate binding protein; HI0074 family";i:13;s:9:"GM21_0768";i:14;s:6:"Operon";i:15;s:6:"584894";i:16;s:29:"GM21_0768;GM21_0769;GM21_0770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1448204-1448280";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1448603-1450253";i:10;s:1:"+";i:11;s:9:"GM21_1242";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_1242";i:14;s:11:"single gene";i:15;s:7:"2621795";i:16;s:9:"GM21_1242";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1448421-1448497";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1448603-1450253";i:10;s:1:"+";i:11;s:9:"GM21_1242";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_1242";i:14;s:11:"single gene";i:15;s:7:"2621795";i:16;s:9:"GM21_1242";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1725684-1725760";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1725291-1725582";i:10;s:1:"-";i:11;s:9:"GM21_1469";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_1469";i:14;s:6:"operon";i:15;s:6:"585038";i:16;s:19:"GM21_1468;GM21_1469";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1874314-1874434";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:6:"Tandem";i:9;s:15:"1875059-1875248";i:10;s:1:"+";i:11;s:9:"GM21_1608";i:12;s:0:"";i:13;s:9:"GM21_1608";i:14;s:11:"Single gene";i:15;s:7:"2621967";i:16;s:9:"GM21_1608";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1874544-1874663";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:6:"Tandem";i:9;s:15:"1875059-1875248";i:10;s:1:"+";i:11;s:9:"GM21_1608";i:12;s:0:"";i:13;s:9:"GM21_1608";i:14;s:11:"Single gene";i:15;s:7:"2621967";i:16;s:9:"GM21_1608";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1874769-1874890";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:6:"Tandem";i:9;s:15:"1875059-1875248";i:10;s:1:"+";i:11;s:9:"GM21_1608";i:12;s:0:"";i:13;s:9:"GM21_1608";i:14;s:11:"Single gene";i:15;s:7:"2621967";i:16;s:9:"GM21_1608";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2163539-2163616";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2163725-2164034";i:10;s:1:"+";i:11;s:9:"GM21_1860";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM21_1860";i:14;s:11:"single gene";i:15;s:7:"2622052";i:16;s:9:"GM21_1860";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. M21 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2260394-2260514";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2259107-2260319";i:10;s:1:"-";i:11;s:9:"GM21_1950";i:12;s:44:"Molybdenum cofactor synthesis domain protein";i:13;s:9:"GM21_1950";i:14;s:6:"Operon";i:15;s:6:"585138";i:16;s:19:"GM21_1949;GM21_1950";i:17;s:56:"molybdopterin cofactor biosynthetic process [GO:0032324]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_012918.1";i:2;s:18:"Geobacter sp. 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