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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
453069-453191
(-)
TPP
451754-452990 (-)
thiO
Glycine oxidase (9)
MexAM1_META1p0430
Operon
DOOR ID:
573698
MexAM1_META1p0427
(thiE)
,
MexAM1_META1p0428
(thiG)
,
MexAM1_META1p0429
(thiS)
,
MexAM1_META1p0430
(thiO)
View Structure
2
659283-659384
(-)
glycine
657956-659135 (-)
gcvT
Glycine cleavage complex protein T; aminomethyltransferase; tetrahydrofolate-dependent (0)
MexAM1_META1p0622
Operon
DOOR ID:
573732
MexAM1_META1p0621
(gcvH)
,
MexAM1_META1p0622
(gcvT)
View Structure
3
1020659-1020868
(-)
cobalamin
1018351-1020553 (-)
MexAM1_META1p0981
Putative TonB-dependent porin receptor
MexAM1_META1p0981
Operon
DOOR ID:
573791
MexAM1_META1p0980,
MexAM1_META1p0981
View Structure
4
1276388-1276466
(-)
fluoride
1274969-1276364 (-)
MexAM1_META1p1217
Putative chloride channel voltage gated family protein
MexAM1_META1p1217
Operon
DOOR ID:
573830
MexAM1_META1p1216,
MexAM1_META1p1217
View Structure
5
1388473-1388673
(-)
cobalamin
1388249-1388432 (-)
MexAM1_META1p1333
MexAM1_META1p1333
Operon
DOOR ID:
573853
MexAM1_META1p1329,
MexAM1_META1p1330
(cobW)
,
MexAM1_META1p1331,
MexAM1_META1p1332,
MexAM1_META1p1333
View Structure
6
1570275-1570379
(+)
TPP
1570453-1572346 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
MexAM1_META1p1503
Single gene
DOOR ID:
2598867
MexAM1_META1p1503
(thiC)
View Structure
7
2943221-2943421
(-)
cobalamin
2940856-2943100 (-)
MexAM1_META1p2820
Putative TonB-dependent siderophore receptor
MexAM1_META1p2820
Single gene
DOOR ID:
2599441
MexAM1_META1p2820
View Structure
8
4173323-4173372
(-)
mini-ykkC
4172495-4173302 (-)
MexAM1_META1p4096
MexAM1_META1p4096
Operon
DOOR ID:
574337
MexAM1_META1p4094,
MexAM1_META1p4095,
MexAM1_META1p4096
View Structure
9
4179432-4179541
(-)
ykkC-yxkD
4178032-4179043 (-)
MexAM1_META1p4102
ABC transporter; periplasmic protein
MexAM1_META1p4102
Operon
DOOR ID:
574338
MexAM1_META1p4097,
MexAM1_META1p4098,
MexAM1_META1p4099,
MexAM1_META1p4100,
MexAM1_META1p4101,
MexAM1_META1p4102
View Structure
Genome:
Methylobacterium extorquens AM1
(
NC_012808.1
);
Phylum:
Alphaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012808.1";i:2;s:31:"Methylobacterium extorquens AM1";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2943221-2943421";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2940856-2943100";i:10;s:1:"-";i:11;s:17:"MexAM1_META1p2820";i:12;s:44:"Putative TonB-dependent siderophore receptor";i:13;s:17:"MexAM1_META1p2820";i:14;s:11:"Single gene";i:15;s:7:"2599441";i:16;s:17:"MexAM1_META1p2820";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012808.1";i:2;s:31:"Methylobacterium extorquens AM1";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4173323-4173372";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4172495-4173302";i:10;s:1:"-";i:11;s:17:"MexAM1_META1p4096";i:12;s:0:"";i:13;s:17:"MexAM1_META1p4096";i:14;s:6:"Operon";i:15;s:6:"574337";i:16;s:53:"MexAM1_META1p4094;MexAM1_META1p4095;MexAM1_META1p4096";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012808.1";i:2;s:31:"Methylobacterium extorquens AM1";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4179432-4179541";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"4178032-4179043";i:10;s:1:"-";i:11;s:17:"MexAM1_META1p4102";i:12;s:36:"ABC transporter; 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