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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
16718-16820
(+)
yybP-ykoY
16933-17458 (+)
NT01EI_0020
NT01EI_0020
Single gene
DOOR ID:
2587544
NT01EI_0020
View Structure
2
180116-180231
(-)
TPP
178072-180004 (-)
NT01EI_0177
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
NT01EI_0177
Operon
DOOR ID:
567616
NT01EI_0176,
NT01EI_0177
View Structure
3
397218-397262
(+)
mini-ykkC
397297-397600 (+)
NT01EI_0388
NT01EI_0388
Single gene
DOOR ID:
2587696
NT01EI_0388
View Structure
4
541573-541729
(+)
FMN
541842-542502 (+)
NT01EI_0545
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
NT01EI_0545
Single gene
DOOR ID:
2587771
NT01EI_0545
View Structure
5
699825-699924
(-)
TPP
698788-699784 (-)
NT01EI_0706
Thiamin/thiamine pyrophosphate ABC transporter; thiamin/thiamine pyrophospate-binding protein; putative
NT01EI_0706
Operon
DOOR ID:
567723
NT01EI_0704
(thiQ)
,
NT01EI_0705
(thiP)
,
NT01EI_0706
View Structure
6
977267-977397
(-)
glycine
975532-975943 (-)
NT01EI_0987
NT01EI_0987
Single gene
DOOR ID:
2587944
NT01EI_0987
View Structure
7
1147023-1147119
(+)
TPP
1147154-1147958 (+)
NT01EI_1152
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
NT01EI_1152
Operon
DOOR ID:
567803
NT01EI_1152,
NT01EI_1153,
NT01EI_1154
View Structure
8
2118563-2118738
(-)
cobalamin
2117086-2118466 (-)
NT01EI_2193
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
NT01EI_2193
Operon
DOOR ID:
567962
NT01EI_2181,
NT01EI_2182,
NT01EI_2183,
NT01EI_2184,
NT01EI_2185,
NT01EI_2186,
NT01EI_2187,
NT01EI_2188,
NT01EI_2189,
NT01EI_2190
(cbiD)
,
NT01EI_2191
(cbiC)
,
NT01EI_2192
(cobD)
,
NT01EI_2193
View Structure
9
2533786-2533929
(-)
MOCO
2532284-2532770 (-)
NT01EI_2639
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
NT01EI_2639
Operon
DOOR ID:
568040
NT01EI_2636,
NT01EI_2637
(moaE)
,
NT01EI_2638,
NT01EI_2639,
NT01EI_2640
(moaA)
View Structure
Genome:
Edwardsiella ictaluri 93-146
(
NC_012779.2
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012779.2";i:2;s:29:"Edwardsiella ictaluri 93-146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"397218-397262";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"397297-397600";i:10;s:1:"+";i:11;s:11:"NT01EI_0388";i:12;s:0:"";i:13;s:11:"NT01EI_0388";i:14;s:11:"Single gene";i:15;s:7:"2587696";i:16;s:11:"NT01EI_0388";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012779.2";i:2;s:29:"Edwardsiella ictaluri 93-146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"541573-541729";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"541842-542502";i:10;s:1:"+";i:11;s:11:"NT01EI_0545";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"NT01EI_0545";i:14;s:11:"Single gene";i:15;s:7:"2587771";i:16;s:11:"NT01EI_0545";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012779.2";i:2;s:29:"Edwardsiella ictaluri 93-146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"699825-699924";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"698788-699784";i:10;s:1:"-";i:11;s:11:"NT01EI_0706";i:12;s:103:"Thiamin/thiamine pyrophosphate ABC transporter; thiamin/thiamine pyrophospate-binding protein; putative";i:13;s:11:"NT01EI_0706";i:14;s:6:"Operon";i:15;s:6:"567723";i:16;s:47:"NT01EI_0704(thiQ);NT01EI_0705(thiP);NT01EI_0706";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012779.2";i:2;s:29:"Edwardsiella ictaluri 93-146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"977267-977397";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"975532-975943";i:10;s:1:"-";i:11;s:11:"NT01EI_0987";i:12;s:0:"";i:13;s:11:"NT01EI_0987";i:14;s:11:"Single gene";i:15;s:7:"2587944";i:16;s:11:"NT01EI_0987";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012779.2";i:2;s:29:"Edwardsiella ictaluri 93-146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1147023-1147119";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1147154-1147958";i:10;s:1:"+";i:11;s:11:"NT01EI_1152";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:11:"NT01EI_1152";i:14;s:6:"Operon";i:15;s:6:"567803";i:16;s:35:"NT01EI_1152;NT01EI_1153;NT01EI_1154";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012779.2";i:2;s:29:"Edwardsiella ictaluri 93-146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2118563-2118738";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2117086-2118466";i:10;s:1:"-";i:11;s:11:"NT01EI_2193";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:11:"NT01EI_2193";i:14;s:6:"Operon";i:15;s:6:"567962";i:16;s:173:"NT01EI_2181;NT01EI_2182;NT01EI_2183;NT01EI_2184;NT01EI_2185;NT01EI_2186;NT01EI_2187;NT01EI_2188;NT01EI_2189;NT01EI_2190(cbiD);NT01EI_2191(cbiC);NT01EI_2192(cobD);NT01EI_2193";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012779.2";i:2;s:29:"Edwardsiella ictaluri 93-146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2533786-2533929";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2532284-2532770";i:10;s:1:"-";i:11;s:11:"NT01EI_2639";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:11:"NT01EI_2639";i:14;s:6:"Operon";i:15;s:6:"568040";i:16;s:71:"NT01EI_2636;NT01EI_2637(moaE);NT01EI_2638;NT01EI_2639;NT01EI_2640(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}
