About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
605127-605278
(+)
FMN
605417-606140 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
GBP346_A0645
Single gene
DOOR ID:
2576489
GBP346_A0645
(ribB)
View Structure
2
987097-987364
(+)
cobalamin
987432-989490 (+)
GBP346_A1026
Outer membrane receptor for transport of vitamin B
GBP346_A1026
Single gene
DOOR ID:
2576649
GBP346_A1026
View Structure
3
1228250-1228296
(+)
mini-ykkC
1228319-1228640 (+)
GBP346_A1273
GBP346_A1273
Single gene
DOOR ID:
2576762
GBP346_A1273
View Structure
4
1373062-1373179
(-)
TPP
1371007-1372939 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
GBP346_A1419
Single gene
DOOR ID:
2576805
GBP346_A1419
(thiC)
View Structure
5
1927913-1928065
(-)
cobalamin
1927271-1927718 (-)
GBP346_A1973
CbiG protein
GBP346_A1973
Operon
DOOR ID:
562169
GBP346_A1971,
GBP346_A1972
(cobO)
,
GBP346_A1973
View Structure
6
1928224-1928483
(+)
cobalamin
1928587-1929883 (+)
hoxN
Nickel/cobalt efflux system
GBP346_A1976
Single gene
DOOR ID:
2577038
GBP346_A1976
(hoxN)
View Structure
7
1946094-1946300
(-)
cobalamin
1944541-1945990 (-)
cobG
Precorrin-3B synthase (3)
GBP346_A1991
Operon
DOOR ID:
562173
GBP346_A1989
(cobI)
,
GBP346_A1990
(cobH)
,
GBP346_A1991
(cobG)
View Structure
8
3027969-3028105
(+)
yybP-ykoY
3028181-3028754 (+)
GBP346_A3120
Integral membrane protein
GBP346_A3120
Operon
DOOR ID:
562401
GBP346_A3114
(xdhC)
,
GBP346_A3115
(add)
,
GBP346_A3116,
GBP346_A3117
(guaD)
,
GBP346_A3119,
GBP346_A3120
View Structure
9
3257748-3257848
(-)
ZMP-ZTP
3256356-3257604 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
GBP346_A3374
Operon
DOOR ID:
562444
GBP346_A3373
(nrdR)
,
GBP346_A3374
(glyA)
View Structure
10
3716153-3716284
(-)
TPP
3715923-3716055 (-)
GBP346_A3867
GBP346_A3867
Operon
DOOR ID:
562542
GBP346_A3863,
GBP346_A3864
(thiG)
,
GBP346_A3865
(thiS)
,
GBP346_A3866,
GBP346_A3867
View Structure
11
3856469-3856608
(-)
SAH
3855012-3856434 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
GBP346_A4024
Single gene
DOOR ID:
2577796
GBP346_A4024
(ahcY)
View Structure
12
3921175-3921284
(+)
glycine
3921472-3922669 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
GBP346_A4098
Operon
DOOR ID:
562584
GBP346_A4098
(gcvT)
,
GBP346_A4099
(gcvH)
View Structure
13
3921317-3921453
(+)
glycine
3921472-3922669 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
GBP346_A4098
Operon
DOOR ID:
562584
GBP346_A4098
(gcvT)
,
GBP346_A4099
(gcvH)
View Structure
Genome:
Burkholderia pseudomallei MSHR346 chromosome I
(
NC_012695.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"605127-605278";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"605417-606140";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:12:"GBP346_A0645";i:14;s:11:"Single gene";i:15;s:7:"2576489";i:16;s:18:"GBP346_A0645(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"987097-987364";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"987432-989490";i:10;s:1:"+";i:11;s:12:"GBP346_A1026";i:12;s:50:"Outer membrane receptor for transport of vitamin B";i:13;s:12:"GBP346_A1026";i:14;s:11:"Single gene";i:15;s:7:"2576649";i:16;s:12:"GBP346_A1026";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1228250-1228296";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1228319-1228640";i:10;s:1:"+";i:11;s:12:"GBP346_A1273";i:12;s:0:"";i:13;s:12:"GBP346_A1273";i:14;s:11:"Single gene";i:15;s:7:"2576762";i:16;s:12:"GBP346_A1273";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1373062-1373179";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1371007-1372939";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"GBP346_A1419";i:14;s:11:"Single gene";i:15;s:7:"2576805";i:16;s:18:"GBP346_A1419(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1927913-1928065";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1927271-1927718";i:10;s:1:"-";i:11;s:12:"GBP346_A1973";i:12;s:12:"CbiG protein";i:13;s:12:"GBP346_A1973";i:14;s:6:"Operon";i:15;s:6:"562169";i:16;s:44:"GBP346_A1971;GBP346_A1972(cobO);GBP346_A1973";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1928224-1928483";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1928587-1929883";i:10;s:1:"+";i:11;s:4:"hoxN";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:12:"GBP346_A1976";i:14;s:11:"Single gene";i:15;s:7:"2577038";i:16;s:18:"GBP346_A1976(hoxN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1946094-1946300";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1944541-1945990";i:10;s:1:"-";i:11;s:4:"cobG";i:12;s:25:"Precorrin-3B synthase (3)";i:13;s:12:"GBP346_A1991";i:14;s:6:"Operon";i:15;s:6:"562173";i:16;s:56:"GBP346_A1989(cobI);GBP346_A1990(cobH);GBP346_A1991(cobG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3027969-3028105";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3028181-3028754";i:10;s:1:"+";i:11;s:12:"GBP346_A3120";i:12;s:25:"Integral membrane protein";i:13;s:12:"GBP346_A3120";i:14;s:6:"Operon";i:15;s:6:"562401";i:16;s:94:"GBP346_A3114(xdhC);GBP346_A3115(add);GBP346_A3116;GBP346_A3117(guaD);GBP346_A3119;GBP346_A3120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3257748-3257848";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3256356-3257604";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:12:"GBP346_A3374";i:14;s:6:"Operon";i:15;s:6:"562444";i:16;s:37:"GBP346_A3373(nrdR);GBP346_A3374(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3716153-3716284";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3715923-3716055";i:10;s:1:"-";i:11;s:12:"GBP346_A3867";i:12;s:0:"";i:13;s:12:"GBP346_A3867";i:14;s:6:"Operon";i:15;s:6:"562542";i:16;s:76:"GBP346_A3863;GBP346_A3864(thiG);GBP346_A3865(thiS);GBP346_A3866;GBP346_A3867";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3856469-3856608";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3855012-3856434";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:12:"GBP346_A4024";i:14;s:11:"Single gene";i:15;s:7:"2577796";i:16;s:18:"GBP346_A4024(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3921175-3921284";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3921472-3922669";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"GBP346_A4098";i:14;s:6:"Operon";i:15;s:6:"562584";i:16;s:37:"GBP346_A4098(gcvT);GBP346_A4099(gcvH)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_012695.1";i:2;s:46:"Burkholderia pseudomallei MSHR346 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3921317-3921453";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3921472-3922669";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"GBP346_A4098";i:14;s:6:"Operon";i:15;s:6:"562584";i:16;s:37:"GBP346_A4098(gcvT);GBP346_A4099(gcvH)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}
