Genome: Tolumonas auensis DSM 9187 (NC_012691.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 246930-247022 (-)TPP246077-246881 (-)Tola_0219

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Tola_0219Operon

DOOR ID: 561198
Tola_0217,
Tola_0218,
Tola_0219
View Structure
2 427804-427998 (+)cobalamin428050-429904 (+)Tola_0378

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Tola_0378Single gene

DOOR ID: 2575280
Tola_0378 View Structure
3 1034201-1034287 (+)c-di-GMP-I1034355-1036662 (+)Tola_0954

Peptidase M11 gametolysin
Tola_0954single gene

DOOR ID: 2575477
Tola_0954 View Structure
4 1164617-1164717 (+)TPP1164819-1166667 (+)Tola_1074

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Tola_1074Operon

DOOR ID: 561368
Tola_1074,
Tola_1075,
Tola_1076,
Tola_1077,
Tola_1078,
Tola_1079
View Structure
5 1196634-1196799 (-)FMN1195904-1196558 (-)Tola_1102

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Tola_1102Single gene

DOOR ID: 2575551
Tola_1102 View Structure
6 1848806-1848981 (-)cobalamin1847307-1848681 (-)Tola_1681

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
Tola_1681Operon

DOOR ID: 561477
Tola_1662 (cobT),
Tola_1663 (cobS),
Tola_1664,
Tola_1665,
Tola_1666,
Tola_1667,
Tola_1668,
Tola_1669,
Tola_1670,
Tola_1671,
Tola_1672,
Tola_1673,
Tola_1674,
Tola_1675,
Tola_1676,
Tola_1677,
Tola_1678 (cbiD),
Tola_1679 (cbiC),
Tola_1680 (cobD),
Tola_1681
View Structure
7 1926855-1926989 (-)MOCO1925303-1925888 (-)Tola_1759

Molybdenum cofactor guanylyltransferase (MoCo guanylyltransferase) (7) (GTP:molybdopterin guanylyltransferase) (Mo-MPT guanylyltransferase) (Molybdopterin guanylyltransferase) (Molybdopterin-guanine dinucleotide synthase) (MGD synthase)
Tola_1759Operon

DOOR ID: 561489
Tola_1754,
Tola_1755,
Tola_1756,
Tola_1757,
Tola_1758,
Tola_1759,
Tola_1760 (moaA)
View Structure
8 2283390-2283568 (+)yybP-ykoY2283569-2284163 (+)Tola_2089

Tola_2089Single gene

DOOR ID: 2575905
Tola_2089 View Structure
9 2356155-2356325 (+)lysine2356402-2357758 (+)Tola_2151

Aspartokinase
Tola_2151Single gene

DOOR ID: 2575928
Tola_2151 View Structure
10 2830367-2830461 (+)glycine2830551-2831925 (+)Tola_2589

Amino acid carrier protein
Tola_2589Single gene

DOOR ID: 2576077
Tola_2589 View Structure
11 3182998-3183047 (-)mini-ykkC3179347-3182950 (-)Tola_2899

Tola_2899Operon

DOOR ID: 561717
Tola_2898,
Tola_2899
View Structure
12 3187227-3187332 (-)ykkC-yxkD3186092-3187169 (-)Tola_2904

ABC transporter periplasmic binding protein; urea carboxylase region
Tola_2904Operon

DOOR ID: 561718
Tola_2900,
Tola_2901,
Tola_2902,
Tola_2903,
Tola_2904
View Structure