About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
258889-258991
(+)
SAM
259039-260053 (+)
Bcav_0238
Methylenetetrahydrofolate reductase (0)
Bcav_0238
Operon
DOOR ID:
559289
Bcav_0238,
Bcav_0239
View Structure
2
504115-504241
(-)
TPP
503730-504024 (-)
Bcav_0453
Bcav_0453
Operon
DOOR ID:
559331
Bcav_0450,
Bcav_0451,
Bcav_0452,
Bcav_0453
View Structure
3
566441-566554
(-)
SAM-IV
564943-566407 (-)
Bcav_0508
Cysteine desulfurase
Bcav_0508
Single gene
DOOR ID:
2572409
Bcav_0508
View Structure
4
569612-569704
(+)
SAM
569711-569951 (+)
Bcav_0511
Bcav_0511
Operon
DOOR ID:
559341
Bcav_0511,
Bcav_0512,
Bcav_0513
View Structure
5
982156-982354
(+)
ydaO-yuaA
982357-983131 (+)
Bcav_0883
NLP/P60 protein
Bcav_0883
Single gene
DOOR ID:
2572528
Bcav_0883
View Structure
6
1873398-1873509
(+)
SAM-IV
1873788-1874796 (+)
Bcav_1628
Bcav_1628
Operon
DOOR ID:
559592
Bcav_1628,
Bcav_1629,
Bcav_1630
View Structure
7
2179367-2179458
(+)
glycine
2179592-2180738 (+)
Bcav_1914
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcav_1914
Operon
DOOR ID:
559660
Bcav_1914,
Bcav_1915,
Bcav_1916
View Structure
8
2332165-2332296
(+)
FMN
2332385-2333186 (+)
Bcav_2051
Binding-protein-dependent transport systems inner membrane component
Bcav_2051
Operon
DOOR ID:
559690
Bcav_2051,
Bcav_2052,
Bcav_2053
(hisE)
,
Bcav_2054
(hisG)
,
Bcav_2055
View Structure
9
3361250-3361339
(-)
ZMP-ZTP
3359585-3361202 (-)
Bcav_3011
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Bcav_3011
Single gene
DOOR ID:
2573115
Bcav_3011
View Structure
10
4230783-4230909
(-)
TPP
4229630-4230731 (-)
Bcav_3809
ABC transporter; periplasmic binding protein; thiB subfamily
Bcav_3809
Single gene
DOOR ID:
2573345
Bcav_3809
View Structure
Genome:
Beutenbergia cavernae DSM 12333
(
NC_012669.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"258889-258991";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"259039-260053";i:10;s:1:"+";i:11;s:9:"Bcav_0238";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:9:"Bcav_0238";i:14;s:6:"Operon";i:15;s:6:"559289";i:16;s:19:"Bcav_0238;Bcav_0239";i:17;s:143:"cellular amino acid biosynthetic process [GO:0008652]; methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"504115-504241";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"503730-504024";i:10;s:1:"-";i:11;s:9:"Bcav_0453";i:12;s:0:"";i:13;s:9:"Bcav_0453";i:14;s:6:"Operon";i:15;s:6:"559331";i:16;s:39:"Bcav_0450;Bcav_0451;Bcav_0452;Bcav_0453";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"566441-566554";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"564943-566407";i:10;s:1:"-";i:11;s:9:"Bcav_0508";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Bcav_0508";i:14;s:11:"Single gene";i:15;s:7:"2572409";i:16;s:9:"Bcav_0508";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"569612-569704";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"569711-569951";i:10;s:1:"+";i:11;s:9:"Bcav_0511";i:12;s:0:"";i:13;s:9:"Bcav_0511";i:14;s:6:"Operon";i:15;s:6:"559341";i:16;s:29:"Bcav_0511;Bcav_0512;Bcav_0513";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"982156-982354";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"982357-983131";i:10;s:1:"+";i:11;s:9:"Bcav_0883";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Bcav_0883";i:14;s:11:"Single gene";i:15;s:7:"2572528";i:16;s:9:"Bcav_0883";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1873398-1873509";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1873788-1874796";i:10;s:1:"+";i:11;s:9:"Bcav_1628";i:12;s:0:"";i:13;s:9:"Bcav_1628";i:14;s:6:"Operon";i:15;s:6:"559592";i:16;s:29:"Bcav_1628;Bcav_1629;Bcav_1630";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2179367-2179458";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2179592-2180738";i:10;s:1:"+";i:11;s:9:"Bcav_1914";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Bcav_1914";i:14;s:6:"Operon";i:15;s:6:"559660";i:16;s:29:"Bcav_1914;Bcav_1915;Bcav_1916";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2332165-2332296";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2332385-2333186";i:10;s:1:"+";i:11;s:9:"Bcav_2051";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Bcav_2051";i:14;s:6:"Operon";i:15;s:6:"559690";i:16;s:61:"Bcav_2051;Bcav_2052;Bcav_2053(hisE);Bcav_2054(hisG);Bcav_2055";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3361250-3361339";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3359585-3361202";i:10;s:1:"-";i:11;s:9:"Bcav_3011";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Bcav_3011";i:14;s:11:"Single gene";i:15;s:7:"2573115";i:16;s:9:"Bcav_3011";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012669.1";i:2;s:32:"Beutenbergia cavernae DSM 12333 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4230783-4230909";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4229630-4230731";i:10;s:1:"-";i:11;s:9:"Bcav_3809";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Bcav_3809";i:14;s:11:"Single gene";i:15;s:7:"2573345";i:16;s:9:"Bcav_3809";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
