RiboswitchDB

Genome: Corynebacterium aurimucosum ATCC 700975 (NC_012590.1); Phylum: Actinobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

413204-413383 (+)

TPP

414130-415567 (+)

ykoD

Putative ABC transport system; ATP-binding protein

Operon

DOOR ID: 553802

cauri_0373 (ykoD),
cauri_0374

2

1624032-1624153 (+)

ykkC-yxkD

1624582-1625602 (+)

cauri_1465

Single gene

DOOR ID: 2559454

cauri_1465

3

1738574-1738688 (+)

TPP

1740532-1741126 (+)

thiE

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)

Operon

DOOR ID: 554075

cauri_1573 (thiC),
cauri_1574 (thiE),
cauri_1575 (thiO),
cauri_1576 (thiS),
cauri_1577 (thiG),
cauri_1578 (thiF)

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012590.1";i:2;s:40:"Corynebacterium aurimucosum ATCC 700975 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1624032-1624153";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1624582-1625602";i:10;s:1:"+";i:11;s:10:"cauri_1465";i:12;s:0:"";i:13;s:10:"cauri_1465";i:14;s:11:"Single gene";i:15;s:7:"2559454";i:16;s:10:"cauri_1465";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012590.1";i:2;s:40:"Corynebacterium aurimucosum ATCC 700975 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1738574-1738688";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1740532-1741126";i:10;s:1:"+";i:11;s:4:"thiE";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS)  (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:10:"cauri_1574";i:14;s:6:"Operon";i:15;s:6:"554075";i:16;s:101:"cauri_1573(thiC);cauri_1574(thiE);cauri_1575(thiO);cauri_1576(thiS);cauri_1577(thiG);cauri_1578(thiF)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure
";}}