Genome: Brevibacillus brevis NBRC 100599 (NC_012491.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 272884-273054 (+)glmS273180-275013 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BBR47_02700Single gene

DOOR ID: 2536444		BBR47_02700 (glmS) View Structure
2 384104-384250 (+)ydaO-yuaA384644-385871 (+)opuAA

Probable glycine betaine ABC transporter ATP-binding protein (2)		BBR47_03760Operon

DOOR ID: 543940		BBR47_03760 (opuAA),
BBR47_03770 (opuAB),
BBR47_03780 (opuAC),
BBR47_03790		 View Structure
3 388723-388869 (+)ydaO-yuaA388972-389197 (+)BBR47_03810

BBR47_03810Single gene

DOOR ID: 2536503		BBR47_03810 View Structure
4 459150-459256 (-)SAM457753-459058 (-)metY

Probable O-acetylhomoserine (Thiol)-lyase (9)		BBR47_04480Single gene

DOOR ID: 2536530		BBR47_04480 (metY) View Structure
5 471834-471949 (+)SAM472049-473063 (+)metN

Methionine import ATP-binding protein MetN 		BBR47_04610Operon

DOOR ID: 543957		BBR47_04610 (metN),
BBR47_04620 (metP),
BBR47_04630 (metQ)		 View Structure
6 551347-551449 (+)purine551604-553146 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BBR47_05310Single gene

DOOR ID: 2536569		BBR47_05310 (guaA) View Structure
7 553837-553938 (+)purine554114-555491 (+)pbuG

Hypoxanthine/guanine permease		BBR47_05330Single gene

DOOR ID: 2536571		BBR47_05330 (pbuG) View Structure
8 613777-613934 (-)ydaO-yuaA613181-613769 (-)BBR47_05920

BBR47_05920Single gene

DOOR ID: 2536584		BBR47_05920 View Structure
9 931130-931233 (+)ykkC-yxkD931373-931727 (+)ykkC

Probable multidrug resistance protein		BBR47_08770Operon

DOOR ID: 544040		BBR47_08770 (ykkC),
BBR47_08780 (ykkD)		 View Structure
10 944363-944479 (+)TPP945109-946213 (+)thiO

Glycine oxidase (9)		BBR47_08930Single gene

DOOR ID: 2536722		BBR47_08930 (thiO) View Structure
11 1043628-1043767 (-)ydaO-yuaA1043101-1043623 (-)BBR47_10020

BBR47_10020Single gene

DOOR ID: 2536779		BBR47_10020 View Structure
12 1092550-1092705 (+)FMN1092938-1093550 (+)ribU

Riboflavin transporter		BBR47_10570Single gene

DOOR ID: 2536810		BBR47_10570 (ribU) View Structure
13 1128005-1128088 (-)c-di-GMP-I1127258-1127813 (-)BBR47_10870

Uncharacterized protein		BBR47_10870operon

DOOR ID: 544078		BBR47_10860,
BBR47_10870		 View Structure
14 1155695-1155880 (-)lysine1154132-1155581 (-)lysP

Lysine-specific permease		BBR47_11190Single gene

DOOR ID: 2536841		BBR47_11190 (lysP) View Structure
15 1265864-1266080 (+)cobalamin1266114-1266291 (+)BBR47_12380

BBR47_12380Single gene

DOOR ID: 2536896		BBR47_12380 View Structure
16 1346705-1346749 (+)PreQ11346754-1347435 (+)ypdP

Probable queuosine precursor transporter (Q precursor transporter)		BBR47_13200Single gene

DOOR ID: 2536918		BBR47_13200 (ypdP) View Structure
17 1738523-1738709 (+)lysine1738940-1740182 (+)lysC

Aspartokinase 		BBR47_16810Single gene

DOOR ID: 2537090		BBR47_16810 (lysC) View Structure
18 1997203-1997354 (-)yybP-ykoY1996403-1997090 (-)BBR47_19000

Conserved hypothetical membrane protein		BBR47_19000Single gene

DOOR ID: 2537175		BBR47_19000 View Structure
19 2100399-2100599 (+)cobalamin2100769-2101789 (+)BBR47_20140

ABC transporter substrate binding protein		BBR47_20140Operon

DOOR ID: 544261		BBR47_20140,
BBR47_20150,
BBR47_20160		 View Structure
20 2297881-2297982 (+)SAM2298103-2301550 (+)metH

Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)		BBR47_22030Operon

DOOR ID: 544301		BBR47_22030 (metH),
BBR47_22040		 View Structure
21 2385728-2385823 (+)glycine2386023-2387127 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		BBR47_22970Operon

DOOR ID: 544320		BBR47_22970 (gcvT),
BBR47_22980 (gcvPA),
BBR47_22990 (gcvPB),
BBR47_23000 (murG),
BBR47_23010 (yqhM)		 View Structure
22 2957032-2957136 (+)SAM2957245-2958178 (+)tomB

Oligopeptide ABC transporter permease protein		BBR47_28340Operon

DOOR ID: 544423		BBR47_28340 (tomB),
BBR47_28350 (tomC),
BBR47_28360 (tomD),
BBR47_28370 (tomF),
BBR47_28380 (tomA)		 View Structure
23 3258649-3258806 (+)ydaO-yuaA3258813-3259605 (+)BBR47_30760

BBR47_30760Single gene

DOOR ID: 2537650		BBR47_30760 View Structure
24 3287364-3287474 (-)TPP3286961-3287165 (-)thiS

Thiazole biosynthesis protein ThiS		BBR47_31040Operon

DOOR ID: 544475		BBR47_30980 (thiY),
BBR47_30990 (thiX),
BBR47_31000 (thiZ),
BBR47_31010 (tenA),
BBR47_31020 (ylmB),
BBR47_31030 (thiG),
BBR47_31040 (thiS),
BBR47_31050		 View Structure
25 3316900-3317099 (-)cobalamin3314463-3316755 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BBR47_31330Operon

DOOR ID: 544481		BBR47_31320,
BBR47_31330 (metE)		 View Structure
26 3320784-3320983 (-)cobalamin3320262-3320622 (-)nrdI

Protein NrdI		BBR47_31360Operon

DOOR ID: 544482		BBR47_31340 (nrdF),
BBR47_31350 (nrdE),
BBR47_31360 (nrdI)		 View Structure
27 3822258-3822370 (+)TPP3822490-3824272 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BBR47_36440Single gene

DOOR ID: 2537857		BBR47_36440 (thiC) View Structure
28 3935669-3935782 (-)SAM3934316-3935582 (-)BBR47_37550

Homoserine dehydrogenase 		BBR47_37550Single gene

DOOR ID: 2537913		BBR47_37550 View Structure
29 3935848-3935954 (-)SAM3934316-3935582 (-)BBR47_37550

Homoserine dehydrogenase 		BBR47_37550Single gene

DOOR ID: 2537913		BBR47_37550 View Structure
30 3936344-3936550 (-)cobalamin3936179-3936308 (-)BBR47_37560

BBR47_37560Single gene

DOOR ID: 2537914		BBR47_37560 View Structure
31 4061607-4061726 (-)SAM4060348-4061512 (-)metI

Cystathionine gamma-synthase/O-acetylhomoserine aminocarboxypropyltransferase (9)		BBR47_38780Operon

DOOR ID: 544628		BBR47_38770 (metC),
BBR47_38780 (metI)		 View Structure
32 4089654-4089843 (-)lysine4088851-4089562 (-)dapD

2;3;4;5-tetrahydropyridine-2;6-dicarboxylate N-acetyltransferase (9) (Tetrahydrodipicolinate N-acetyltransferase) (THP acetyltransferase) (Tetrahydropicolinate acetylase)		BBR47_39110Operon

DOOR ID: 544631		BBR47_39090 (dapE),
BBR47_39100 (dapC),
BBR47_39110 (dapD)		 View Structure
33 4117046-4117195 (-)cobalamin4115894-4116890 (-)BBR47_39380

ABC transporter substrate binding protein		BBR47_39380Operon

DOOR ID: 544637		BBR47_39350,
BBR47_39360,
BBR47_39370,
BBR47_39380		 View Structure
34 4417765-4417881 (-)SAM4416500-4417682 (-)mtnE

Aminotransferase MtnE 		BBR47_41850Single gene

DOOR ID: 2538131		BBR47_41850 (mtnE) View Structure
35 4601798-4601883 (-)c-di-GMP-I4600254-4601712 (-)yfmT

Probable aldehyde dehydrogenase		BBR47_43520operon

DOOR ID: 544709		BBR47_43510,
BBR47_43520 (yfmT)		 View Structure
36 4667485-4667608 (-)ykkC-yxkD4666771-4667362 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BBR47_44140Operon

DOOR ID: 544725		BBR47_44130 (pbuX),
BBR47_44140 (xpt)		 View Structure
37 4667593-4667694 (-)purine4666771-4667362 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BBR47_44140Operon

DOOR ID: 544725		BBR47_44130 (pbuX),
BBR47_44140 (xpt)		 View Structure
38 4851673-4851716 (+)PreQ14851810-4852482 (+)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BBR47_45830Operon

DOOR ID: 544756		BBR47_45830 (queC),
BBR47_45840 (queD),
BBR47_45850 (queE),
BBR47_45860 (queF)		 View Structure
39 5063658-5063802 (-)FMN5062420-5063527 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BBR47_48140Operon

DOOR ID: 544796		BBR47_48110 (ribH),
BBR47_48120 (ribA),
BBR47_48130 (ribE),
BBR47_48140 (ribD)		 View Structure
40 5063917-5064065 (-)FMN5062420-5063527 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BBR47_48140Operon

DOOR ID: 544796		BBR47_48110 (ribH),
BBR47_48120 (ribA),
BBR47_48130 (ribE),
BBR47_48140 (ribD)		 View Structure
41 5138786-5138931 (-)SAM5137422-5138652 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BBR47_48870Operon

DOOR ID: 544812		BBR47_48860 (mtnA),
BBR47_48870 (mtnK)		 View Structure
42 5140852-5141028 (+)SAM5141113-5142328 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase 		BBR47_48900Operon

DOOR ID: 544814		BBR47_48900 (mtnW),
BBR47_48910 (mtnX),
BBR47_48920 (mtnB),
BBR47_48930 (mtnD)		 View Structure
43 5185648-5185842 (-)cobalamin5184741-5185506 (-)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		BBR47_49340Operon

DOOR ID: 544824		BBR47_49300,
BBR47_49310 (cbiO),
BBR47_49320 (cbiQ),
BBR47_49330 (cbiN),
BBR47_49340 (cbiM)		 View Structure
44 5381572-5381691 (-)SAM5380165-5381188 (-)mtnA

Putative ribose ABC transporter substrate binding protein		BBR47_51130Single gene

DOOR ID: 2538515		BBR47_51130 (mtnA) View Structure
45 5612389-5612470 (-)c-di-GMP-II5611578-5612130 (-)BBR47_52960

Hypothetical membrane protein		BBR47_52960Single gene

DOOR ID: 2538583		BBR47_52960 View Structure
46 5704529-5704630 (-)SAM5703189-5704395 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BBR47_54050Single gene

DOOR ID: 2538610		BBR47_54050 (metK) View Structure
47 5867835-5867923 (+)c-di-GMP-I5868104-5869823 (+)ywrD

Putative gamma-glutamyltranspeptidase		BBR47_55520operon

DOOR ID: 544946		BBR47_55520 (ywrD),
BBR47_55530		 View Structure
48 5888616-5888738 (-)SAM5887386-5888415 (-)BBR47_55710

ABC transporter substrate binding protein		BBR47_55710Single gene

DOOR ID: 2538685		BBR47_55710 View Structure
49 5894670-5894769 (-)purine5893184-5894618 (-)BBR47_55780

BBR47_55780Operon

DOOR ID: 544950		BBR47_55760,
BBR47_55770,
BBR47_55780		 View Structure
50 5961364-5961464 (-)c-di-GMP-I5959317-5961291 (-)BBR47_56440

Putative methyl-accepting chemotaxis protein		BBR47_56440single gene

DOOR ID: 2538719		BBR47_56440 View Structure
51 6016192-6016293 (+)SAM6016395-6017226 (+)BBR47_56920

Lipoprotein		BBR47_56920Operon

DOOR ID: 544973		BBR47_56920,
BBR47_56930,
BBR47_56940		 View Structure