RiboswitchDB

Genome: Brucella melitensis ATCC 23457 chromosome II (NC_012442.1); Phylum: Alphaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

296980-297193 (+)

cobalamin

297544-297766 (+)

nrdH

Glutaredoxin-like protein NrdH

Operon

DOOR ID: 537437

BMEA_B0314 (nrdH),
BMEA_B0315 (nrdI),
BMEA_B0316,
BMEA_B0317 (nrdF)

2

653186-653349 (+)

FMN

653425-653902 (+)

BMEA_B0667

6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)

Single gene

DOOR ID: 2523256

BMEA_B0667

3

692424-692508 (-)

glycine

691172-692276 (-)

gcvT

Glycine cleavage system T protein (0)

Operon

DOOR ID: 537504

BMEA_B0701 (gcvP),
BMEA_B0702 (gcvH),
BMEA_B0703 (gcvT)

4

717519-717751 (-)

cobalamin

716284-717319 (-)

BMEA_B0733

Periplasmic binding protein

Operon

DOOR ID: 537510

BMEA_B0731,
BMEA_B0732,
BMEA_B0733

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012442.1";i:2;s:44:"Brucella melitensis ATCC 23457 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"653186-653349";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"653425-653902";i:10;s:1:"+";i:11;s:10:"BMEA_B0667";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:10:"BMEA_B0667";i:14;s:11:"Single gene";i:15;s:7:"2523256";i:16;s:10:"BMEA_B0667";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure
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";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012442.1";i:2;s:44:"Brucella melitensis ATCC 23457 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"717519-717751";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"716284-717319";i:10;s:1:"-";i:11;s:10:"BMEA_B0733";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"BMEA_B0733";i:14;s:6:"Operon";i:15;s:6:"537510";i:16;s:32:"BMEA_B0731;BMEA_B0732;BMEA_B0733";i:17;s:0:"";i:18;s:15:"View Structure
";}}