Genome: Agrobacterium vitis S4 chromosome I (NC_011989.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 245054-245224 (+)ZMP-ZTP245244-245874 (+)rhtB

RhtB family transporter
Avi_0289Single gene

DOOR ID: 2501088
Avi_0289 (rhtB) View Structure
2 463970-464048 (-)sam-alpha462734-463919 (-)metZ

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Avi_0544Single gene

DOOR ID: 2501193
Avi_0544 (metZ) View Structure
3 960912-960988 (-)fluoride959380-960829 (-)Avi_1136

Avi_1136Operon

DOOR ID: 526259
Avi_1135,
Avi_1136
View Structure
4 1677122-1677303 (+)cobalamin1677381-1678068 (+)Avi_2042

Nitroreductase
Avi_2042Single gene

DOOR ID: 2501719
Avi_2042 View Structure
5 1854409-1854495 (-)glycine1853117-1854257 (-)gcvT

Glycine cleavage system T protein aminomethyltransferase
Avi_2254Operon

DOOR ID: 526403
Avi_2252 (gcvP),
Avi_2253 (gcvH),
Avi_2254 (gcvT)
View Structure
6 2057123-2057231 (+)ykkC-yxkD2057301-2058375 (+)Avi_2497

Possible taurine transport system protein
Avi_2497Operon

DOOR ID: 526438
Avi_2497,
Avi_2498,
Avi_2499,
Avi_2500,
Avi_2501,
Avi_2502 (pccA)
View Structure
7 2060016-2060065 (+)mini-ykkC2060089-2060917 (+)Avi_2500

Avi_2500Operon

DOOR ID: 526438
Avi_2497,
Avi_2498,
Avi_2499,
Avi_2500,
Avi_2501,
Avi_2502 (pccA)
View Structure
8 2192900-2193283 (-)cobalamin2192457-2192760 (-)Avi_2651

Avi_2651Operon

DOOR ID: 526457
Avi_2646 (cobO),
Avi_2647 (cobN),
Avi_2648 (cobW),
Avi_2650 (cobU),
Avi_2651
View Structure
9 3575563-3575640 (-)sam-alpha3574563-3575493 (-)metA

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Avi_4253Operon

DOOR ID: 526685
Avi_4250,
Avi_4251,
Avi_4253 (metA)
View Structure
10 3584631-3584738 (+)TPP3584779-3585781 (+)tbpA

ABC transporter substrate binding protein (Thiamine)
Avi_4266Operon

DOOR ID: 526688
Avi_4266 (tbpA),
Avi_4267 (thiP),
Avi_4268 (thiQ)
View Structure