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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
32806-32887
(+)
ZMP-ZTP
32913-33546 (+)
CCNA_00029
Lysine exporter protein
CCNA_00029
Operon
DOOR ID:
519887
CCNA_00029,
CCNA_00030
View Structure
2
88947-89027
(+)
ZMP-ZTP
89052-90642 (+)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
CCNA_00084
Operon
DOOR ID:
519899
CCNA_00084
(purH)
,
CCNA_00085
View Structure
3
528978-529206
(+)
cobalamin
529323-531657 (+)
CCNA_00515
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
CCNA_00515
Single gene
DOOR ID:
2489626
CCNA_00515
View Structure
4
1950973-1951162
(+)
cobalamin
1951297-1953250 (+)
CCNA_01826
Vitamin B12 receptor
CCNA_01826
Operon
DOOR ID:
520278
CCNA_01826,
CCNA_01827
View Structure
5
2118707-2118805
(+)
glycine
2118944-2119154 (-)
CCNA_01973
CCNA_01973
Single gene
DOOR ID:
2490146
CCNA_01973
View Structure
6
2260162-2260267
(-)
TPP
2258249-2260088 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CCNA_02109
Operon
DOOR ID:
520338
CCNA_02107,
CCNA_02108,
CCNA_02109
(thiC)
View Structure
7
2597350-2597459
(-)
yybP-ykoY
2596688-2597264 (-)
CCNA_02455
Conserved integral membrane protein
CCNA_02455
Single gene
DOOR ID:
2490324
CCNA_02455
View Structure
8
3629419-3629509
(-)
glycine
3628122-3629250 (-)
gcvT
Glycine cleavage system aminomethyltransferase T (0)
CCNA_03465
Operon
DOOR ID:
520632
CCNA_03462,
CCNA_03463,
CCNA_03464,
CCNA_03465
View Structure
9
3708517-3708605
(-)
glycine
3705741-3708144 (-)
CCNA_03549
TonB-dependent receptor
CCNA_03549
Single gene
DOOR ID:
2490754
CCNA_03549
View Structure
10
3712998-3713042
(-)
mini-ykkC
3712654-3712975 (-)
CCNA_03556
CCNA_03556
Single gene
DOOR ID:
2490757
CCNA_03556
View Structure
Genome:
Caulobacter crescentus NA1000
(
NC_011916.1
);
Phylum:
Alphaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011916.1";i:2;s:29:"Caulobacter crescentus NA1000";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2597350-2597459";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2596688-2597264";i:10;s:1:"-";i:11;s:10:"CCNA_02455";i:12;s:35:"Conserved integral membrane protein";i:13;s:10:"CCNA_02455";i:14;s:11:"Single gene";i:15;s:7:"2490324";i:16;s:10:"CCNA_02455";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011916.1";i:2;s:29:"Caulobacter crescentus NA1000";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3629419-3629509";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3628122-3629250";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:52:"Glycine cleavage system aminomethyltransferase T (0)";i:13;s:10:"CCNA_03465";i:14;s:6:"Operon";i:15;s:6:"520632";i:16;s:43:"CCNA_03462;CCNA_03463;CCNA_03464;CCNA_03465";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011916.1";i:2;s:29:"Caulobacter crescentus NA1000";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3708517-3708605";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3705741-3708144";i:10;s:1:"-";i:11;s:10:"CCNA_03549";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"CCNA_03549";i:14;s:11:"Single gene";i:15;s:7:"2490754";i:16;s:10:"CCNA_03549";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011916.1";i:2;s:29:"Caulobacter crescentus NA1000";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3712998-3713042";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3712654-3712975";i:10;s:1:"-";i:11;s:10:"CCNA_03556";i:12;s:0:"";i:13;s:10:"CCNA_03556";i:14;s:11:"Single gene";i:15;s:7:"2490757";i:16;s:10:"CCNA_03556";i:17;s:0:"";i:18;s:15:"View Structure ";}}
