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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
310418-310526
(+)
SAM-IV
311669-313097 (+)
Achl_0294
Putative monooxygenase
Achl_0294
Operon
DOOR ID:
514153
Achl_0293,
Achl_0294,
Achl_0295,
Achl_0296,
Achl_0297,
Achl_0298
View Structure
2
583012-583111
(-)
glycine
580003-582895 (-)
Achl_0538
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Achl_0538
Operon
DOOR ID:
514194
Achl_0533,
Achl_0534,
Achl_0535,
Achl_0536,
Achl_0537
(gcvT)
,
Achl_0538
View Structure
3
583365-583463
(+)
glycine
583607-585149 (+)
Achl_0539
Amino acid permease-associated region
Achl_0539
Single gene
DOOR ID:
2477976
Achl_0539
View Structure
4
862667-862824
(-)
ydaO-yuaA
861932-862664 (-)
Achl_0802
Achl_0802
Single gene
DOOR ID:
2478088
Achl_0802
View Structure
5
967218-967314
(+)
glycine
967502-970349 (+)
Achl_0881
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Achl_0881
Operon
DOOR ID:
514263
Achl_0881,
Achl_0882
(gcvT)
View Structure
6
1002065-1002308
(+)
ydaO-yuaA
1002318-1003149 (+)
Achl_0912
Peptidase M23
Achl_0912
Single gene
DOOR ID:
2478140
Achl_0912
View Structure
7
1003262-1003459
(+)
ydaO-yuaA
1003613-1004216 (+)
Achl_0913
NLP/P60 protein
Achl_0913
Single gene
DOOR ID:
2478141
Achl_0913
View Structure
8
1524978-1525093
(+)
SAM-IV
1525136-1526459 (+)
Achl_1360
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Achl_1360
Single gene
DOOR ID:
2478310
Achl_1360
View Structure
9
1526602-1526716
(+)
SAM-IV
1526728-1527844 (+)
Achl_1361
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Achl_1361
Single gene
DOOR ID:
2478311
Achl_1361
View Structure
10
1877008-1877166
(+)
FMN
1877260-1877980 (+)
Achl_1668
Nicotinamide mononucleotide transporter PnuC
Achl_1668
Operon
DOOR ID:
514435
Achl_1668,
Achl_1669,
Achl_1670,
Achl_1671,
Achl_1672,
Achl_1673
(ribH)
View Structure
11
2323607-2323799
(+)
ydaO-yuaA
2323802-2324639 (+)
Achl_2065
Peptidoglycan-binding LysM
Achl_2065
Single gene
DOOR ID:
2478542
Achl_2065
View Structure
12
2411053-2411151
(-)
TPP
2408872-2409181 (-)
rplU
50S ribosomal protein L21
Achl_2145
Operon
DOOR ID:
514534
Achl_2144
(rpmA)
,
Achl_2145
(rplU)
View Structure
13
2496265-2496372
(+)
TPP
2498232-2498967 (-)
Achl_2228
Achl_2228
Single gene
DOOR ID:
2478607
Achl_2228
View Structure
14
2682512-2682625
(+)
SAM-IV
2682664-2684083 (+)
Achl_2389
Cysteine desulfurase
Achl_2389
Operon
DOOR ID:
514590
Achl_2389,
Achl_2390,
Achl_2391,
Achl_2392,
Achl_2393,
Achl_2394
View Structure
15
2819927-2820045
(-)
TPP
2818335-2818572 (-)
Achl_2501
Thiamine biosynthesis protein ThiS
Achl_2501
Operon
DOOR ID:
514615
Achl_2500
(thiG)
,
Achl_2501,
Achl_2502
View Structure
16
3865849-3865914
(+)
ykkC-III
3865923-3866247 (+)
Achl_3491
Achl_3491
operon
DOOR ID:
514807
Achl_3491,
Achl_3492,
Achl_3493
View Structure
17
4050999-4051113
(+)
SAM-IV
4051126-4051405 (+)
Achl_3643
Achl_3643
Operon
DOOR ID:
514839
Achl_3643,
Achl_3644,
Achl_3645
View Structure
18
4059913-4060050
(-)
TPP
4059222-4059846 (-)
Achl_3651
ABC transporter; permease protein
Achl_3651
Operon
DOOR ID:
514841
Achl_3649,
Achl_3650,
Achl_3651
View Structure
Genome:
Arthrobacter chlorophenolicus A6
(
NC_011886.1
);
Phylum:
Actinobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"310418-310526";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"311669-313097";i:10;s:1:"+";i:11;s:9:"Achl_0294";i:12;s:22:"Putative monooxygenase";i:13;s:9:"Achl_0294";i:14;s:6:"Operon";i:15;s:6:"514153";i:16;s:59:"Achl_0293;Achl_0294;Achl_0295;Achl_0296;Achl_0297;Achl_0298";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"583012-583111";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"580003-582895";i:10;s:1:"-";i:11;s:9:"Achl_0538";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Achl_0538";i:14;s:6:"Operon";i:15;s:6:"514194";i:16;s:65:"Achl_0533;Achl_0534;Achl_0535;Achl_0536;Achl_0537(gcvT);Achl_0538";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"583365-583463";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"583607-585149";i:10;s:1:"+";i:11;s:9:"Achl_0539";i:12;s:37:"Amino acid permease-associated region";i:13;s:9:"Achl_0539";i:14;s:11:"Single gene";i:15;s:7:"2477976";i:16;s:9:"Achl_0539";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"862667-862824";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"861932-862664";i:10;s:1:"-";i:11;s:9:"Achl_0802";i:12;s:0:"";i:13;s:9:"Achl_0802";i:14;s:11:"Single gene";i:15;s:7:"2478088";i:16;s:9:"Achl_0802";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"967218-967314";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"967502-970349";i:10;s:1:"+";i:11;s:9:"Achl_0881";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Achl_0881";i:14;s:6:"Operon";i:15;s:6:"514263";i:16;s:25:"Achl_0881;Achl_0882(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1002065-1002308";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1002318-1003149";i:10;s:1:"+";i:11;s:9:"Achl_0912";i:12;s:13:"Peptidase M23";i:13;s:9:"Achl_0912";i:14;s:11:"Single gene";i:15;s:7:"2478140";i:16;s:9:"Achl_0912";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1003262-1003459";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1003613-1004216";i:10;s:1:"+";i:11;s:9:"Achl_0913";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Achl_0913";i:14;s:11:"Single gene";i:15;s:7:"2478141";i:16;s:9:"Achl_0913";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1524978-1525093";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1525136-1526459";i:10;s:1:"+";i:11;s:9:"Achl_1360";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Achl_1360";i:14;s:11:"Single gene";i:15;s:7:"2478310";i:16;s:9:"Achl_1360";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1526602-1526716";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1526728-1527844";i:10;s:1:"+";i:11;s:9:"Achl_1361";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Achl_1361";i:14;s:11:"Single gene";i:15;s:7:"2478311";i:16;s:9:"Achl_1361";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1877008-1877166";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1877260-1877980";i:10;s:1:"+";i:11;s:9:"Achl_1668";i:12;s:44:"Nicotinamide mononucleotide transporter PnuC";i:13;s:9:"Achl_1668";i:14;s:6:"Operon";i:15;s:6:"514435";i:16;s:65:"Achl_1668;Achl_1669;Achl_1670;Achl_1671;Achl_1672;Achl_1673(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2323607-2323799";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2323802-2324639";i:10;s:1:"+";i:11;s:9:"Achl_2065";i:12;s:26:"Peptidoglycan-binding LysM";i:13;s:9:"Achl_2065";i:14;s:11:"Single gene";i:15;s:7:"2478542";i:16;s:9:"Achl_2065";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2411053-2411151";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2408872-2409181";i:10;s:1:"-";i:11;s:4:"rplU";i:12;s:25:"50S ribosomal protein L21";i:13;s:9:"Achl_2145";i:14;s:6:"Operon";i:15;s:6:"514534";i:16;s:31:"Achl_2144(rpmA);Achl_2145(rplU)";i:17;s:24:"translation [GO:0006412]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2496265-2496372";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2498232-2498967";i:10;s:1:"-";i:11;s:9:"Achl_2228";i:12;s:0:"";i:13;s:9:"Achl_2228";i:14;s:11:"Single gene";i:15;s:7:"2478607";i:16;s:9:"Achl_2228";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2682512-2682625";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2682664-2684083";i:10;s:1:"+";i:11;s:9:"Achl_2389";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Achl_2389";i:14;s:6:"Operon";i:15;s:6:"514590";i:16;s:59:"Achl_2389;Achl_2390;Achl_2391;Achl_2392;Achl_2393;Achl_2394";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2819927-2820045";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2818335-2818572";i:10;s:1:"-";i:11;s:9:"Achl_2501";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Achl_2501";i:14;s:6:"Operon";i:15;s:6:"514615";i:16;s:35:"Achl_2500(thiG);Achl_2501;Achl_2502";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3865849-3865914";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"3865923-3866247";i:10;s:1:"+";i:11;s:9:"Achl_3491";i:12;s:0:"";i:13;s:9:"Achl_3491";i:14;s:6:"operon";i:15;s:6:"514807";i:16;s:29:"Achl_3491;Achl_3492;Achl_3493";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4050999-4051113";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4051126-4051405";i:10;s:1:"+";i:11;s:9:"Achl_3643";i:12;s:0:"";i:13;s:9:"Achl_3643";i:14;s:6:"Operon";i:15;s:6:"514839";i:16;s:29:"Achl_3643;Achl_3644;Achl_3645";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_011886.1";i:2;s:33:"Arthrobacter chlorophenolicus A6 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4059913-4060050";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4059222-4059846";i:10;s:1:"-";i:11;s:9:"Achl_3651";i:12;s:33:"ABC transporter; permease protein";i:13;s:9:"Achl_3651";i:14;s:6:"Operon";i:15;s:6:"514841";i:16;s:29:"Achl_3649;Achl_3650;Achl_3651";i:17;s:0:"";i:18;s:15:"View Structure ";}}
