Genome: Desulfovibrio vulgaris str. 'Miyazaki F' (NC_011769.1); Phylum: delta/epsilon subdivisions
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 965742-965847 (-)TPP965466-965667 (-)DvMF_0801

Thiamine biosynthesis protein ThiS
DvMF_0801Operon

DOOR ID: 504753
DvMF_0799 (thiH),
DvMF_0800 (thiG),
DvMF_0801
View Structure
2 965944-966047 (-)TPP965466-965667 (-)DvMF_0801

Thiamine biosynthesis protein ThiS
DvMF_0801Operon

DOOR ID: 504753
DvMF_0799 (thiH),
DvMF_0800 (thiG),
DvMF_0801
View Structure
3 1194635-1194783 (+)ydaO-yuaA1195100-1197143 (+)DvMF_0985

Probable potassium transport system protein kup
DvMF_0985Single gene

DOOR ID: 2456917
DvMF_0985 View Structure
4 1360081-1360242 (-)yybP-ykoY1358819-1360046 (-)DvMF_1109

Sodium/calcium exchanger membrane region
DvMF_1109Single gene

DOOR ID: 2456973
DvMF_1109 View Structure
5 1760628-1760811 (-)yybP-ykoY1760026-1760614 (-)DvMF_1438

DvMF_1438Single gene

DOOR ID: 2457141
DvMF_1438 View Structure
6 1806582-1806821 (-)cobalamin1804297-1806412 (-)DvMF_1473

Anaerobic ribonucleoside-triphosphate reductase
DvMF_1473Single gene

DOOR ID: 2457156
DvMF_1473 View Structure
7 1846273-1846454 (+)cobalamin1846655-1847657 (+)DvMF_1496

Anaerobic cobalt chelatase
DvMF_1496Operon

DOOR ID: 504885
DvMF_1496,
DvMF_1497,
DvMF_1498,
DvMF_1499
View Structure
8 2813461-2813545 (+)ZMP-ZTP2813880-2815104 (+)DvMF_2241

Benzoate transporter
DvMF_2241Single gene

DOOR ID: 2457559
DvMF_2241 View Structure
9 3387006-3387165 (+)FMN3387456-3388110 (+)DvMF_2680

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
DvMF_2680Single gene

DOOR ID: 2457758
DvMF_2680 View Structure
10 3489878-3489990 (+)glycine3490624-3491650 (-)DvMF_2760

DvMF_2760Single gene

DOOR ID: 2457796
DvMF_2760 View Structure
11 3872318-3872438 (-)SAM3871762-3872029 (-)DvMF_3066

DvMF_3066Single gene

DOOR ID: 2457967
DvMF_3066 View Structure