Genome: Escherichia coli S88 (NC_011742.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 79177-79276 (-)TPP78162-79146 (-)tbpA

Thiamin transporter subunit periplasmic-binding component of ABC superfamily
ECS88_0073Operon

DOOR ID: 495893
ECS88_0071 (thiQ),
ECS88_0072 (thiP),
ECS88_0073 (tbpA)
View Structure
2 819887-820031 (+)MOCO821029-821542 (+)moaB

Molybdenum cofactor biosynthesis protein B
ECS88_0799Operon

DOOR ID: 496028
ECS88_0798 (moaA),
ECS88_0799 (moaB),
ECS88_0800 (moaC),
ECS88_0801 (moaD),
ECS88_0802 (moaE)
View Structure
3 1860578-1860679 (+)yybP-ykoY1860809-1861376 (+)yebN

Probable manganese efflux pump MntP
ECS88_1873Single gene

DOOR ID: 2440193
ECS88_1873 (yebN) View Structure
4 2221917-2222013 (-)TPP2221093-2221882 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECS88_2246Operon

DOOR ID: 496278
ECS88_2243 (yegW),
ECS88_2244 (yegX),
ECS88_2245 (thiD),
ECS88_2246 (thiM)
View Structure
5 3407010-3407158 (-)FMN3406252-3406906 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECS88_3444Single gene

DOOR ID: 2440594
ECS88_3444 (ribB) View Structure
6 4399756-4399946 (+)cobalamin4400010-4401855 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECS88_4425Operon

DOOR ID: 496700
ECS88_4425 (btuB),
ECS88_4426 (murI)
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7 4431260-4431360 (-)TPP4429283-4431179 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECS88_4455Operon

DOOR ID: 496705
ECS88_4450 (thiH),
ECS88_4451 (thiG),
ECS88_4452 (thiS),
ECS88_4453 (thiF),
ECS88_4454 (thiE),
ECS88_4455 (thiC)
View Structure
8 4472701-4472897 (-)lysine4471259-4472609 (-)lysC

Aspartokinase
ECS88_4497Single gene

DOOR ID: 2440900
ECS88_4497 (lysC) View Structure
9 4698996-4699042 (+)mini-ykkC4699059-4699377 (+)sugE

ECS88_4736Single gene

DOOR ID: 2440974
ECS88_4736 (sugE) View Structure
10 4796850-4796965 (+)Mg sensor4797058-4799755 (+)mgtA

Magnesium transporter
ECS88_4832Single gene

DOOR ID: 2441011
ECS88_4832 (mgtA) View Structure