Genome: Rhodospirillum centenum SW (NC_011420.2); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 332573-332783 (-)cobalamin330455-332483 (-)nrdD

Anaerobic ribonucleoside-triphosphate reductase
RC1_0319Single gene

DOOR ID: 2404091
RC1_0319 (nrdD) View Structure
2 332896-333110 (+)cobalamin333223-334810 (+)cobQ

Cobyric acid synthase
RC1_0321Operon

DOOR ID: 479934
RC1_0321 (cobQ),
RC1_0322 (cobD),
RC1_0323 (cobU)
View Structure
3 717972-718202 (-)cobalamin715745-717737 (-)btuB

Vitamin B12 transporter BtuB
RC1_0665Operon

DOOR ID: 479993
RC1_0661,
RC1_0662 (fecE),
RC1_0663 (hmuU),
RC1_0664,
RC1_0665 (btuB)
View Structure
4 2663000-2663077 (+)sam-alpha2663150-2664407 (+)metZ

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RC1_2590Single gene

DOOR ID: 2405057
RC1_2590 (metZ) View Structure
5 3179373-3179475 (-)TPP3178164-3179370 (-)thiO

Glycine oxidase ThiO (9)
RC1_3102Operon

DOOR ID: 480451
RC1_3100 (thiG),
RC1_3101 (thiS),
RC1_3102 (thiO)
View Structure
6 3781356-3781462 (+)glycine3781633-3782788 (+)gcvT

Glycine cleavage system T protein (0)
RC1_3656Operon

DOOR ID: 480555
RC1_3656 (gcvT),
RC1_3657 (gcvH),
RC1_3658 (gcvPA),
RC1_3659 (gcvPB),
RC1_3661
View Structure
7 3849852-3850036 (+)cobalamin3850082-3850790 (+)bluB

Cob(II)yrinic acid a;c-diamide reductase; putative
RC1_3717Single gene

DOOR ID: 2405594
RC1_3717 (bluB) View Structure
8 4045804-4046000 (+)cobalamin4046197-4048087 (+)RC1_3870

TonB-dependent receptor; putative
RC1_3870Operon

DOOR ID: 480590
RC1_3870,
RC1_3871,
RC1_3872,
RC1_3873
View Structure
9 4171236-4171366 (+)TPP4171430-4173302 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
RC1_3970Single gene

DOOR ID: 2405714
RC1_3970 (thiC) View Structure