Genome: Aliivibrio salmonicida LFI1238 chromosome I (NC_011312.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 380531-380644 (+)TPP380695-381712 (+)tbpA

Thiamine-binding periplasmic protein
VSAL_I0349Operon

DOOR ID: 473673
VSAL_I0349 (tbpA),
VSAL_I0350 (thiP),
VSAL_I0351 (thiQ)
View Structure
2 1917535-1917640 (+)glycine1917736-1919119 (+)VSAL_I1796

Sodium/alanine symporter
VSAL_I1796Single gene

DOOR ID: 2392057
VSAL_I1796 View Structure
3 2012938-2013084 (+)MOCO2014074-2014554 (+)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
VSAL_I1878Operon

DOOR ID: 473937
VSAL_I1877 (moaA),
VSAL_I1878 (moaC),
VSAL_I1879 (moaD),
VSAL_I1880 (moaE)
View Structure
4 2124416-2124498 (-)c-di-GMP-I2123699-2124287 (-)tfoX

Putative DNA transformation protein TfoX
VSAL_I1982single gene

DOOR ID: 2392142
VSAL_I1982 (tfoX) View Structure
5 2302433-2302616 (-)lysine2300761-2302348 (-)VSAL_I2144

Putative sodium/proton antiporter
VSAL_I2144Single gene

DOOR ID: 2392211
VSAL_I2144 View Structure
6 3132288-3132518 (-)cobalamin3130385-3132242 (-)VSAL_I2886

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VSAL_I2886Operon

DOOR ID: 474125
VSAL_I2884 (murI),
VSAL_I2885,
VSAL_I2886
View Structure
7 3230504-3230617 (+)TPP3230775-3232722 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VSAL_I2983Operon

DOOR ID: 474143
VSAL_I2983 (thiC),
VSAL_I2984 (thiE),
VSAL_I2985 (thiF),
VSAL_I2986 (thiS),
VSAL_I2987 (thiG),
VSAL_I2988 (thiH)
View Structure