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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
188473-188568
(-)
TPP
186212-188402 (-)
Smal_0150
TonB-dependent siderophore receptor
Smal_0150
Operon
DOOR ID:
457376
Smal_0149,
Smal_0150
View Structure
2
261804-262019
(-)
cobalamin
260957-261644 (-)
Smal_0215
Epoxyqueuosine reductase QueH (Queuosine biosynthesis protein QueH)
Smal_0215
Operon
DOOR ID:
457389
Smal_0214,
Smal_0215
View Structure
3
542264-542487
(-)
cobalamin
540305-542147 (-)
Smal_0461
TonB-dependent vitamin B12 receptor
Smal_0461
Single gene
DOOR ID:
2360713
Smal_0461
View Structure
4
691560-691705
(+)
FMN
691782-692409 (+)
Smal_0581
Riboflavin synthase; alpha subunit
Smal_0581
Operon
DOOR ID:
457464
Smal_0581,
Smal_0582
View Structure
5
739937-740019
(-)
SAH
738454-739900 (-)
Smal_0626
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Smal_0626
Single gene
DOOR ID:
2360761
Smal_0626
View Structure
6
1611224-1611287
(-)
fluoride
1610748-1611141 (-)
Smal_1422
Putative fluoride ion transporter CrcB
Smal_1422
Single gene
DOOR ID:
2361048
Smal_1422
View Structure
7
3343077-3343179
(+)
glycine
3343241-3346109 (+)
Smal_3000
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Smal_3000
Single gene
DOOR ID:
2361632
Smal_3000
View Structure
8
3407144-3407262
(-)
SAM
3406034-3407066 (-)
Smal_3051
Homoserine O-acetyltransferase (1)
Smal_3051
Operon
DOOR ID:
457985
Smal_3049,
Smal_3050,
Smal_3051
View Structure
9
3730970-3731071
(-)
TPP
3729042-3730887 (-)
Smal_3325
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Smal_3325
Single gene
DOOR ID:
2361770
Smal_3325
View Structure
10
4063637-4063726
(+)
glycine
4063927-4064545 (+)
Smal_3609
Smal_3609
Single gene
DOOR ID:
2361900
Smal_3609
View Structure
11
4063740-4063845
(+)
glycine
4063927-4064545 (+)
Smal_3609
Smal_3609
Single gene
DOOR ID:
2361900
Smal_3609
View Structure
12
4475999-4476088
(-)
yybP-ykoY
4475334-4475910 (-)
Smal_3977
Putative manganese efflux pump MntP
Smal_3977
Single gene
DOOR ID:
2362061
Smal_3977
View Structure
Genome:
Stenotrophomonas maltophilia R551-3
(
NC_011071.1
);
Phylum:
Gammaproteobacteria
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tRNA processing [GO:0008033]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"542264-542487";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"540305-542147";i:10;s:1:"-";i:11;s:9:"Smal_0461";i:12;s:35:"TonB-dependent vitamin B12 receptor";i:13;s:9:"Smal_0461";i:14;s:11:"Single gene";i:15;s:7:"2360713";i:16;s:9:"Smal_0461";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"691560-691705";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"691782-692409";i:10;s:1:"+";i:11;s:9:"Smal_0581";i:12;s:34:"Riboflavin synthase; alpha subunit";i:13;s:9:"Smal_0581";i:14;s:6:"Operon";i:15;s:6:"457464";i:16;s:19:"Smal_0581;Smal_0582";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"739937-740019";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"738454-739900";i:10;s:1:"-";i:11;s:9:"Smal_0626";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Smal_0626";i:14;s:11:"Single gene";i:15;s:7:"2360761";i:16;s:9:"Smal_0626";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1611224-1611287";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1610748-1611141";i:10;s:1:"-";i:11;s:9:"Smal_1422";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"Smal_1422";i:14;s:11:"Single gene";i:15;s:7:"2361048";i:16;s:9:"Smal_1422";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3343077-3343179";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3343241-3346109";i:10;s:1:"+";i:11;s:9:"Smal_3000";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Smal_3000";i:14;s:11:"Single gene";i:15;s:7:"2361632";i:16;s:9:"Smal_3000";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3407144-3407262";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3406034-3407066";i:10;s:1:"-";i:11;s:9:"Smal_3051";i:12;s:34:"Homoserine O-acetyltransferase (1)";i:13;s:9:"Smal_3051";i:14;s:6:"Operon";i:15;s:6:"457985";i:16;s:29:"Smal_3049;Smal_3050;Smal_3051";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3730970-3731071";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3729042-3730887";i:10;s:1:"-";i:11;s:9:"Smal_3325";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Smal_3325";i:14;s:11:"Single gene";i:15;s:7:"2361770";i:16;s:9:"Smal_3325";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4063637-4063726";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4063927-4064545";i:10;s:1:"+";i:11;s:9:"Smal_3609";i:12;s:0:"";i:13;s:9:"Smal_3609";i:14;s:11:"Single gene";i:15;s:7:"2361900";i:16;s:9:"Smal_3609";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4063740-4063845";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4063927-4064545";i:10;s:1:"+";i:11;s:9:"Smal_3609";i:12;s:0:"";i:13;s:9:"Smal_3609";i:14;s:11:"Single gene";i:15;s:7:"2361900";i:16;s:9:"Smal_3609";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011071.1";i:2;s:36:"Stenotrophomonas maltophilia R551-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4475999-4476088";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4475334-4475910";i:10;s:1:"-";i:11;s:9:"Smal_3977";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"Smal_3977";i:14;s:11:"Single gene";i:15;s:7:"2362061";i:16;s:9:"Smal_3977";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
