Genome: Prosthecochloris aestuarii DSM 271 (NC_011059.1); Phylum: Bacteroidetes/Chlorobi group
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 351579-351793 (+)cobalamin352019-352799 (+)Paes_0325

Paes_0325Single gene

DOOR ID: 2358724
Paes_0325 View Structure
2 778657-778762 (+)SAM778877-780170 (+)Paes_0729

O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Paes_0729Operon

DOOR ID: 456416
Paes_0729,
Paes_0730
View Structure
3 992728-992918 (+)cobalamin993083-995231 (+)Paes_0906

Anaerobic ribonucleoside-triphosphate reductase
Paes_0906Operon

DOOR ID: 456451
Paes_0906,
Paes_0907
View Structure
4 1110758-1110853 (-)TPP1109912-1110683 (-)Paes_1007

Thiamine thiazole synthase
Paes_1007Operon

DOOR ID: 456472
Paes_1004,
Paes_1005,
Paes_1006,
Paes_1007
View Structure
5 1377057-1377305 (-)cobalamin1374947-1376852 (-)Paes_1271

TonB-dependent receptor plug
Paes_1271Single gene

DOOR ID: 2359081
Paes_1271 View Structure
6 1379820-1380011 (-)cobalamin1377355-1379815 (-)Paes_1272

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Paes_1272Single gene

DOOR ID: 2359082
Paes_1272 View Structure
7 1382941-1383162 (-)cobalamin1380334-1382920 (-)Paes_1274

TonB-dependent receptor plug
Paes_1274Single gene

DOOR ID: 2359083
Paes_1274 View Structure
8 1397762-1397976 (-)cobalamin1396543-1397551 (-)Paes_1281

Xylose isomerase domain protein TIM barrel
Paes_1281Operon

DOOR ID: 456524
Paes_1275,
Paes_1276,
Paes_1277,
Paes_1278,
Paes_1279,
Paes_1280,
Paes_1281
View Structure
9 1398201-1398439 (+)cobalamin1398677-1400774 (+)Paes_1282

TonB-dependent receptor
Paes_1282Operon

DOOR ID: 456525
Paes_1282,
Paes_1283,
Paes_1284,
Paes_1285
View Structure
10 1422497-1422745 (-)cobalamin1420323-1422228 (-)Paes_1301

TonB-dependent receptor
Paes_1301Single gene

DOOR ID: 2359084
Paes_1301 View Structure
11 1699447-1699542 (+)TPP1699619-1701305 (+)Paes_1561

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Paes_1561Single gene

DOOR ID: 2359188
Paes_1561 View Structure