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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
194851-195003
(+)
FMN
195057-195726 (+)
Clim_0178
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Clim_0178
Single gene
DOOR ID:
2333359
Clim_0178
View Structure
2
606285-606563
(+)
cobalamin
606816-610257 (+)
Clim_0539
Vitamin B12-dependent ribonucleotide reductase
Clim_0539
Single gene
DOOR ID:
2333492
Clim_0539
View Structure
3
1091598-1091839
(+)
cobalamin
1092107-1093994 (+)
Clim_1001
TonB-dependent receptor
Clim_1001
Single gene
DOOR ID:
2333689
Clim_1001
View Structure
4
1124998-1125215
(+)
cobalamin
1125497-1127807 (+)
Clim_1023
TonB-dependent receptor plug
Clim_1023
Operon
DOOR ID:
443776
Clim_1023,
Clim_1024
View Structure
5
1165582-1165821
(+)
cobalamin
1166074-1168060 (+)
Clim_1064
TonB-dependent receptor
Clim_1064
Single gene
DOOR ID:
2333707
Clim_1064
View Structure
6
1834847-1834968
(+)
TPP
1835037-1836720 (+)
Clim_1669
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Clim_1669
Single gene
DOOR ID:
2333963
Clim_1669
View Structure
7
2001771-2001878
(-)
SAM
2000360-2001653 (-)
Clim_1825
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Clim_1825
Operon
DOOR ID:
443935
Clim_1824,
Clim_1825
View Structure
Genome:
Chlorobium limicola DSM 245
(
NC_010803.1
);
Phylum:
Bacteroidetes/Chlorobi group
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