RiboswitchDB

Genome: Brucella abortus S19 chromosome II (NC_010740.1); Phylum: Alphaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

477721-477953 (+)

cobalamin

478152-479187 (+)

BAbS19_II04560

Periplasmic binding protein

Operon

DOOR ID: 441767

BAbS19_II04560,
BAbS19_II04570,
BAbS19_II04580

2

502944-503028 (+)

glycine

503175-504279 (+)

gcvT

Glycine cleavage T protein (Aminomethyl transferase)

Operon

DOOR ID: 441772

BAbS19_II04830 (gcvT),
BAbS19_II04840,
BAbS19_II04850

3

542132-542295 (-)

FMN

541578-542055 (-)

BAbS19_II05140

6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)

Single gene

DOOR ID: 2329526

BAbS19_II05140

4

873156-873369 (-)

cobalamin

872582-872804 (-)

BAbS19_II08200

Glutaredoxin

Operon

DOOR ID: 441833

BAbS19_II08170 (nrdF),
BAbS19_II08180,
BAbS19_II08190 (nrdI),
BAbS19_II08200

a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010740.1";i:2;s:34:"Brucella abortus S19 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"477721-477953";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"478152-479187";i:10;s:1:"+";i:11;s:14:"BAbS19_II04560";i:12;s:27:"Periplasmic binding protein";i:13;s:14:"BAbS19_II04560";i:14;s:6:"Operon";i:15;s:6:"441767";i:16;s:44:"BAbS19_II04560;BAbS19_II04570;BAbS19_II04580";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010740.1";i:2;s:34:"Brucella abortus S19 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"502944-503028";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"503175-504279";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:52:"Glycine cleavage T protein (Aminomethyl transferase)";i:13;s:14:"BAbS19_II04830";i:14;s:6:"Operon";i:15;s:6:"441772";i:16;s:50:"BAbS19_II04830(gcvT);BAbS19_II04840;BAbS19_II04850";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010740.1";i:2;s:34:"Brucella abortus S19 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"542132-542295";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"541578-542055";i:10;s:1:"-";i:11;s:14:"BAbS19_II05140";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:14:"BAbS19_II05140";i:14;s:11:"Single gene";i:15;s:7:"2329526";i:16;s:14:"BAbS19_II05140";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010740.1";i:2;s:34:"Brucella abortus S19 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"873156-873369";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"872582-872804";i:10;s:1:"-";i:11;s:14:"BAbS19_II08200";i:12;s:12:"Glutaredoxin";i:13;s:14:"BAbS19_II08200";i:14;s:6:"Operon";i:15;s:6:"441833";i:16;s:71:"BAbS19_II08170(nrdF);BAbS19_II08180;BAbS19_II08190(nrdI);BAbS19_II08200";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure
";}}