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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
66575-66674
(-)
TPP
65560-66544 (-)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
SbBS512_E0060
Operon
DOOR ID:
431375
SbBS512_E0058
(thiQ)
,
SbBS512_E0059
(thiP)
,
SbBS512_E0060
(tbpA)
View Structure
2
1026192-1026288
(+)
TPP
1026322-1027111 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SbBS512_E1134
Operon
DOOR ID:
431552
SbBS512_E1134
(thiM)
,
SbBS512_E1135
(thiD)
,
SbBS512_E1136,
SbBS512_E1138
View Structure
3
1897728-1897829
(+)
yybP-ykoY
1897959-1898526 (+)
SbBS512_E2088
Probable manganese efflux pump MntP
SbBS512_E2088
Single gene
DOOR ID:
2308653
SbBS512_E2088
View Structure
4
2372533-2372677
(-)
MOCO
2371021-2371534 (-)
moaB
Molybdenum cofactor biosynthesis protein B
SbBS512_E2570
Operon
DOOR ID:
431774
SbBS512_E2567
(moaE)
,
SbBS512_E2568
(moaD)
,
SbBS512_E2569
(moaC)
,
SbBS512_E2570
(moaB)
,
SbBS512_E2571
(moaA)
View Structure
5
3230146-3230294
(-)
FMN
3229388-3230042 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SbBS512_E3476
Single gene
DOOR ID:
2309606
SbBS512_E3476
(ribB)
View Structure
6
4197036-4197136
(-)
TPP
4195059-4196955 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SbBS512_E4485
Operon
DOOR ID:
432123
SbBS512_E4484
(thiE)
,
SbBS512_E4485
(thiC)
View Structure
7
4236076-4236272
(-)
lysine
4234634-4235984 (-)
lysC
Aspartokinase
SbBS512_E4529
Single gene
DOOR ID:
2308390
SbBS512_E4529
(lysC)
View Structure
8
4373302-4373348
(+)
mini-ykkC
4373365-4373683 (+)
sugE
SbBS512_E4681
Single gene
DOOR ID:
2309881
SbBS512_E4681
(sugE)
View Structure
9
4512153-4512268
(-)
Mg sensor
4509362-4512059 (-)
mgtA
Magnesium-translocating P-type ATPase
SbBS512_E4841
Single gene
DOOR ID:
2309229
SbBS512_E4841
(mgtA)
View Structure
Genome:
Shigella boydii CDC 3083-94
(
NC_010658.1
);
Phylum:
Gammaproteobacteria
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transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1026192-1026288";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1026322-1027111";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:13:"SbBS512_E1134";i:14;s:6:"Operon";i:15;s:6:"431552";i:16;s:67:"SbBS512_E1134(thiM);SbBS512_E1135(thiD);SbBS512_E1136;SbBS512_E1138";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1897728-1897829";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1897959-1898526";i:10;s:1:"+";i:11;s:13:"SbBS512_E2088";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:13:"SbBS512_E2088";i:14;s:11:"Single gene";i:15;s:7:"2308653";i:16;s:13:"SbBS512_E2088";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2372533-2372677";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2371021-2371534";i:10;s:1:"-";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:13:"SbBS512_E2570";i:14;s:6:"Operon";i:15;s:6:"431774";i:16;s:99:"SbBS512_E2567(moaE);SbBS512_E2568(moaD);SbBS512_E2569(moaC);SbBS512_E2570(moaB);SbBS512_E2571(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3230146-3230294";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3229388-3230042";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:13:"SbBS512_E3476";i:14;s:11:"Single gene";i:15;s:7:"2309606";i:16;s:19:"SbBS512_E3476(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4197036-4197136";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4195059-4196955";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"SbBS512_E4485";i:14;s:6:"Operon";i:15;s:6:"432123";i:16;s:39:"SbBS512_E4484(thiE);SbBS512_E4485(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4236076-4236272";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4234634-4235984";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:13:"SbBS512_E4529";i:14;s:11:"Single gene";i:15;s:7:"2308390";i:16;s:19:"SbBS512_E4529(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4373302-4373348";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4373365-4373683";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:13:"SbBS512_E4681";i:14;s:11:"Single gene";i:15;s:7:"2309881";i:16;s:19:"SbBS512_E4681(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010658.1";i:2;s:28:"Shigella boydii CDC 3083-94 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4512153-4512268";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4509362-4512059";i:10;s:1:"-";i:11;s:4:"mgtA";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:13:"SbBS512_E4841";i:14;s:11:"Single gene";i:15;s:7:"2309229";i:16;s:19:"SbBS512_E4841(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
