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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
663669-663818
(+)
MOCO
664829-665309 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
PMI0611
Operon
DOOR ID:
417857
PMI0610
(moaA)
,
PMI0611
(moaC)
,
PMI0612
(moaD)
,
PMI0613
(moaE)
View Structure
2
1702537-1702625
(-)
TPP
1701688-1702486 (-)
thiD
Phosphomethylpyrimidine kinase
PMI1593
Single gene
DOOR ID:
2276935
PMI1593
(thiD)
View Structure
3
1718953-1719091
(+)
yybP-ykoY
1719151-1719736 (+)
PMI1608
Putative manganese efflux pump MntP
PMI1608
Single gene
DOOR ID:
2276948
PMI1608
View Structure
4
2281678-2281849
(-)
ykoK
2280527-2281601 (-)
mgtE
Magnesium transporter MgtE
PMI2109
Single gene
DOOR ID:
2277149
PMI2109
(mgtE)
View Structure
5
2530162-2530254
(+)
TPP
2530318-2531332 (+)
thiB
Thiamine ABC transporter; substrate-binding protein
PMI2322
Operon
DOOR ID:
418149
PMI2322
(thiB)
,
PMI2323
(thiP)
,
PMI2324
(thiQ)
View Structure
6
2572877-2573036
(-)
FMN
2572098-2572752 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
PMI2353
Single gene
DOOR ID:
2277233
PMI2353
(ribB)
View Structure
7
3046465-3046587
(+)
TPP
3046718-3048671 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PMI2777
Operon
DOOR ID:
418237
PMI2777
(thiC)
,
PMI2778
(thiE)
,
PMI2779
(thiF)
,
PMI2780
(thiS)
,
PMI2781
(thiG)
,
PMI2782
(thiH)
View Structure
8
3566653-3566856
(+)
cobalamin
3566924-3568778 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
PMI3246
Operon
DOOR ID:
418325
PMI3246
(btuB)
,
PMI3247
(murI)
View Structure
9
3916543-3916592
(+)
mini-ykkC
3916612-3916927 (+)
sugE
PMI3584
Single gene
DOOR ID:
2277663
PMI3584
(sugE)
View Structure
Genome:
Proteus mirabilis HI4320
(
NC_010554.1
);
Phylum:
Gammaproteobacteria
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substrate-binding protein";i:13;s:7:"PMI2322";i:14;s:6:"Operon";i:15;s:6:"418149";i:16;s:41:"PMI2322(thiB);PMI2323(thiP);PMI2324(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010554.1";i:2;s:25:"Proteus mirabilis HI4320 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2572877-2573036";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2572098-2572752";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:7:"PMI2353";i:14;s:11:"Single gene";i:15;s:7:"2277233";i:16;s:13:"PMI2353(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010554.1";i:2;s:25:"Proteus mirabilis HI4320 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3046465-3046587";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3046718-3048671";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"PMI2777";i:14;s:6:"Operon";i:15;s:6:"418237";i:16;s:83:"PMI2777(thiC);PMI2778(thiE);PMI2779(thiF);PMI2780(thiS);PMI2781(thiG);PMI2782(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010554.1";i:2;s:25:"Proteus mirabilis HI4320 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3566653-3566856";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3566924-3568778";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:7:"PMI3246";i:14;s:6:"Operon";i:15;s:6:"418325";i:16;s:27:"PMI3246(btuB);PMI3247(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010554.1";i:2;s:25:"Proteus mirabilis HI4320 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3916543-3916592";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3916612-3916927";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:7:"PMI3584";i:14;s:11:"Single gene";i:15;s:7:"2277663";i:16;s:13:"PMI3584(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
