Genome: Pseudomonas putida W619 (NC_010501.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 537987-538083 (-)SAH536556-537966 (-)PputW619_0489

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		PputW619_0489Single gene

DOOR ID: 2246676		PputW619_0489 View Structure
2 639267-639408 (-)FMN638535-639186 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		PputW619_0582Single gene

DOOR ID: 2246708		PputW619_0582 (ribB) View Structure
3 1362675-1362895 (+)cobalamin1363013-1363625 (+)PputW619_1231

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		PputW619_1231Operon

DOOR ID: 404373		PputW619_1231,
PputW619_1232,
PputW619_1233,
PputW619_1234 (cobD),
PputW619_1235,
PputW619_1236,
PputW619_1237 (cobU),
PputW619_1238 (cobT),
PputW619_1239,
PputW619_1240 (cobS)		 View Structure
4 1390785-1390836 (-)mini-ykkC1390441-1390759 (-)PputW619_1256

PputW619_1256Single gene

DOOR ID: 2246980		PputW619_1256 View Structure
5 2158320-2158518 (-)cobalamin2157198-2158209 (-)PputW619_1929

Periplasmic binding protein		PputW619_1929Operon

DOOR ID: 404504		PputW619_1925,
PputW619_1926,
PputW619_1927,
PputW619_1928,
PputW619_1929		 View Structure
6 2162066-2162272 (-)cobalamin2159826-2161998 (-)PputW619_1931

TonB-dependent siderophore receptor		PputW619_1931Single gene

DOOR ID: 2247276		PputW619_1931 View Structure
7 2699677-2699735 (+)SAH2700414-2701113 (+)PputW619_2431

3-oxoacid CoA-transferase; A subunit 		PputW619_2431Operon

DOOR ID: 404592		PputW619_2431,
PputW619_2432		 View Structure
8 2961828-2961941 (-)TPP2961101-2961749 (-)PputW619_2678

Aminopyrimidine aminohydrolase 		PputW619_2678Operon

DOOR ID: 404637		PputW619_2677,
PputW619_2678		 View Structure
9 3069152-3069362 (-)cobalamin3067985-3069053 (-)PputW619_2774

Cobalamin biosynthesis protein CobW		PputW619_2774Operon

DOOR ID: 404660		PputW619_2771,
PputW619_2772,
PputW619_2773 (cobN),
PputW619_2774		 View Structure
10 3070260-3070485 (+)cobalamin3070592-3070778 (+)PputW619_2776

Cobalt transporter; subunit CbtB		PputW619_2776Operon

DOOR ID: 404661		PputW619_2776,
PputW619_2777,
PputW619_2778,
PputW619_2779		 View Structure
11 4893994-4894113 (+)yybP-ykoY4894201-4894786 (+)PputW619_4428

PputW619_4428Single gene

DOOR ID: 2248256		PputW619_4428 View Structure
12 5206726-5206832 (-)TPP5204682-5206569 (-)PputW619_4714

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		PputW619_4714Single gene

DOOR ID: 2248373		PputW619_4714 View Structure