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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
870063-870207
(+)
MOCO
871205-871718 (+)
moaB
ECDH10B_0850
Operon
DOOR ID:
401190
ECDH10B_0849
(moaA)
,
ECDH10B_0850
(moaB)
,
ECDH10B_0851
(moaC)
,
ECDH10B_0852
(moaD)
,
ECDH10B_0853
(moaE)
View Structure
2
1994051-1994152
(+)
yybP-ykoY
1994282-1994849 (+)
yebN
Probable manganese efflux pump MntP
ECDH10B_1959
Single gene
DOOR ID:
2241213
ECDH10B_1959
(yebN)
View Structure
3
2274366-2274462
(-)
TPP
2273542-2274331 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECDH10B_2257
Operon
DOOR ID:
401428
ECDH10B_2254
(yegW)
,
ECDH10B_2255
(yegX)
,
ECDH10B_2256
(thiD)
,
ECDH10B_2257
(thiM)
View Structure
4
3280337-3280485
(-)
FMN
3279579-3280233 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECDH10B_3215
Single gene
DOOR ID:
2241583
ECDH10B_3215
(ribB)
View Structure
5
4261104-4261294
(+)
cobalamin
4261358-4263203 (+)
btuB
ECDH10B_4155
Operon
DOOR ID:
401788
ECDH10B_4155
(btuB)
,
ECDH10B_4156
(murI)
View Structure
6
4293899-4293999
(-)
TPP
4291922-4293818 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECDH10B_4183
Operon
DOOR ID:
401793
ECDH10B_4178
(thiH)
,
ECDH10B_4179
(thiG)
,
ECDH10B_4180
(thiS)
,
ECDH10B_4181
(thiF)
,
ECDH10B_4182
(thiE)
,
ECDH10B_4183
(thiC)
View Structure
7
4331044-4331240
(-)
lysine
4329602-4330952 (-)
lysC
ECDH10B_4213
Single gene
DOOR ID:
2241907
ECDH10B_4213
(lysC)
View Structure
8
4475196-4475242
(+)
mini-ykkC
4475259-4475577 (+)
sugE
ECDH10B_4343
Single gene
DOOR ID:
2241958
ECDH10B_4343
(sugE)
View Structure
9
4567247-4567362
(+)
Mg sensor
4567455-4570152 (+)
mgtA
ECDH10B_4437
Single gene
DOOR ID:
2242000
ECDH10B_4437
(mgtA)
View Structure
Genome:
Escherichia coli str. K-12 substr. DH10B
(
NC_010473.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"870063-870207";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"871205-871718";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:12:"ECDH10B_0850";i:14;s:6:"Operon";i:15;s:6:"401190";i:16;s:94:"ECDH10B_0849(moaA);ECDH10B_0850(moaB);ECDH10B_0851(moaC);ECDH10B_0852(moaD);ECDH10B_0853(moaE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1994051-1994152";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1994282-1994849";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:12:"ECDH10B_1959";i:14;s:11:"Single gene";i:15;s:7:"2241213";i:16;s:18:"ECDH10B_1959(yebN)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2274366-2274462";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2273542-2274331";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:12:"ECDH10B_2257";i:14;s:6:"Operon";i:15;s:6:"401428";i:16;s:75:"ECDH10B_2254(yegW);ECDH10B_2255(yegX);ECDH10B_2256(thiD);ECDH10B_2257(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3280337-3280485";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3279579-3280233";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:12:"ECDH10B_3215";i:14;s:11:"Single gene";i:15;s:7:"2241583";i:16;s:18:"ECDH10B_3215(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4261104-4261294";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4261358-4263203";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:12:"ECDH10B_4155";i:14;s:6:"Operon";i:15;s:6:"401788";i:16;s:37:"ECDH10B_4155(btuB);ECDH10B_4156(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4293899-4293999";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4291922-4293818";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"ECDH10B_4183";i:14;s:6:"Operon";i:15;s:6:"401793";i:16;s:113:"ECDH10B_4178(thiH);ECDH10B_4179(thiG);ECDH10B_4180(thiS);ECDH10B_4181(thiF);ECDH10B_4182(thiE);ECDH10B_4183(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4331044-4331240";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4329602-4330952";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:12:"ECDH10B_4213";i:14;s:11:"Single gene";i:15;s:7:"2241907";i:16;s:18:"ECDH10B_4213(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4475196-4475242";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4475259-4475577";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:12:"ECDH10B_4343";i:14;s:11:"Single gene";i:15;s:7:"2241958";i:16;s:18:"ECDH10B_4343(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010473.1";i:2;s:41:"Escherichia coli str. K-12 substr. DH10B ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4567247-4567362";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4567455-4570152";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:12:"ECDH10B_4437";i:14;s:11:"Single gene";i:15;s:7:"2242000";i:16;s:18:"ECDH10B_4437(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
