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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
709852-710000
(+)
FMN
710103-710757 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EcolC_0656
Single gene
DOOR ID:
2238700
EcolC_0656
(ribB)
View Structure
2
1709565-1709661
(+)
TPP
1709695-1710484 (+)
EcolC_1543
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EcolC_1543
Operon
DOOR ID:
400096
EcolC_1543,
EcolC_1544,
EcolC_1545,
EcolC_1546
View Structure
3
2010355-2010456
(-)
yybP-ykoY
2009657-2010224 (-)
EcolC_1811
Probable manganese efflux pump MntP
EcolC_1811
Single gene
DOOR ID:
2239065
EcolC_1811
View Structure
4
3129345-3129489
(-)
MOCO
3127833-3128346 (-)
EcolC_2861
EcolC_2861
Operon
DOOR ID:
400330
EcolC_2858
(moaE)
,
EcolC_2859
(moaD)
,
EcolC_2860
(moaC)
,
EcolC_2861,
EcolC_2862
(moaA)
View Structure
5
3923971-3924070
(+)
TPP
3924100-3925084 (+)
tbpA
EcolC_3589
Operon
DOOR ID:
400481
EcolC_3589
(tbpA)
,
EcolC_3590
(thiP)
,
EcolC_3591
(thiQ)
View Structure
6
4123037-4123152
(-)
Mg sensor
4120246-4122943 (-)
EcolC_3769
EcolC_3769
Single gene
DOOR ID:
2239791
EcolC_3769
View Structure
7
4220219-4220265
(-)
mini-ykkC
4219883-4220201 (-)
EcolC_3862
EcolC_3862
Single gene
DOOR ID:
2239828
EcolC_3862
View Structure
8
4400402-4400598
(+)
lysine
4400689-4402039 (+)
EcolC_4006
EcolC_4006
Single gene
DOOR ID:
2239888
EcolC_4006
View Structure
9
4436969-4437069
(+)
TPP
4437149-4439045 (+)
EcolC_4031
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EcolC_4031
Operon
DOOR ID:
400570
EcolC_4031,
EcolC_4032,
EcolC_4033,
EcolC_4034,
EcolC_4035
(thiG)
,
EcolC_4036
(thiH)
View Structure
10
4468500-4468690
(-)
cobalamin
4466590-4468435 (-)
btuB
EcolC_4050
Operon
DOOR ID:
400575
EcolC_4049,
EcolC_4050
(btuB)
View Structure
Genome:
Escherichia coli ATCC 8739
(
NC_010468.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2010355-2010456";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2009657-2010224";i:10;s:1:"-";i:11;s:10:"EcolC_1811";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"EcolC_1811";i:14;s:11:"Single gene";i:15;s:7:"2239065";i:16;s:10:"EcolC_1811";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3129345-3129489";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3127833-3128346";i:10;s:1:"-";i:11;s:10:"EcolC_2861";i:12;s:0:"";i:13;s:10:"EcolC_2861";i:14;s:6:"Operon";i:15;s:6:"400330";i:16;s:78:"EcolC_2858(moaE);EcolC_2859(moaD);EcolC_2860(moaC);EcolC_2861;EcolC_2862(moaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3923971-3924070";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3924100-3925084";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"EcolC_3589";i:14;s:6:"Operon";i:15;s:6:"400481";i:16;s:50:"EcolC_3589(tbpA);EcolC_3590(thiP);EcolC_3591(thiQ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4123037-4123152";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4120246-4122943";i:10;s:1:"-";i:11;s:10:"EcolC_3769";i:12;s:0:"";i:13;s:10:"EcolC_3769";i:14;s:11:"Single gene";i:15;s:7:"2239791";i:16;s:10:"EcolC_3769";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4220219-4220265";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4219883-4220201";i:10;s:1:"-";i:11;s:10:"EcolC_3862";i:12;s:0:"";i:13;s:10:"EcolC_3862";i:14;s:11:"Single gene";i:15;s:7:"2239828";i:16;s:10:"EcolC_3862";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4400402-4400598";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4400689-4402039";i:10;s:1:"+";i:11;s:10:"EcolC_4006";i:12;s:0:"";i:13;s:10:"EcolC_4006";i:14;s:11:"Single gene";i:15;s:7:"2239888";i:16;s:10:"EcolC_4006";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4436969-4437069";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4437149-4439045";i:10;s:1:"+";i:11;s:10:"EcolC_4031";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"EcolC_4031";i:14;s:6:"Operon";i:15;s:6:"400570";i:16;s:77:"EcolC_4031;EcolC_4032;EcolC_4033;EcolC_4034;EcolC_4035(thiG);EcolC_4036(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010468.1";i:2;s:27:"Escherichia coli ATCC 8739 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4468500-4468690";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4466590-4468435";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:10:"EcolC_4050";i:14;s:6:"Operon";i:15;s:6:"400575";i:16;s:27:"EcolC_4049;EcolC_4050(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
