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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
374165-374290
(-)
TPP
371986-374032 (-)
YPK_0347
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YPK_0347
Operon
DOOR ID:
399021
YPK_0342
(thiH)
,
YPK_0343
(thiG)
,
YPK_0344,
YPK_0345,
YPK_0346,
YPK_0347
View Structure
2
709558-709747
(+)
FMN
709989-710643 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPK_0649
Single gene
DOOR ID:
2236898
YPK_0649
(ribB)
View Structure
3
1450267-1450371
(+)
TPP
1450405-1450498 (+)
YPK_1320
YPK_1320
Operon
DOOR ID:
399215
YPK_1320,
YPK_1321
View Structure
4
2701568-2701764
(+)
yybP-ykoY
2701774-2702344 (+)
YPK_2468
Putative manganese efflux pump MntP
YPK_2468
Single gene
DOOR ID:
2237669
YPK_2468
View Structure
5
3220478-3220624
(-)
MOCO
3218688-3219168 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPK_2921
Operon
DOOR ID:
399507
YPK_2919
(moaE)
,
YPK_2920
(moaD)
,
YPK_2921
(moaC)
View Structure
6
3331346-3331409
(+)
fluoride
3331509-3331893 (+)
YPK_3030
Putative fluoride ion transporter CrcB
YPK_3030
Single gene
DOOR ID:
2237935
YPK_3030
View Structure
7
3894827-3894964
(+)
TPP
3896006-3897614 (+)
thiP
Thiamine ABC transporter; inner membrane subunit
YPK_3543
Operon
DOOR ID:
399628
YPK_3542
(tbpA)
,
YPK_3543
(thiP)
,
YPK_3544
(thiQ)
View Structure
8
4208006-4208052
(-)
mini-ykkC
4207150-4207507 (+)
YPK_3816
YPK_3816
Operon
DOOR ID:
399676
YPK_3813,
YPK_3814,
YPK_3815,
YPK_3816
View Structure
9
4498692-4498954
(-)
cobalamin
4496730-4498623 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YPK_4073
Operon
DOOR ID:
399727
YPK_4072,
YPK_4073
(btuB)
View Structure
Genome:
Yersinia pseudotuberculosis YPIII
(
NC_010465.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"709558-709747";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"709989-710643";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"YPK_0649";i:14;s:11:"Single gene";i:15;s:7:"2236898";i:16;s:14:"YPK_0649(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1450267-1450371";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1450405-1450498";i:10;s:1:"+";i:11;s:8:"YPK_1320";i:12;s:0:"";i:13;s:8:"YPK_1320";i:14;s:6:"Operon";i:15;s:6:"399215";i:16;s:17:"YPK_1320;YPK_1321";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2701568-2701764";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2701774-2702344";i:10;s:1:"+";i:11;s:8:"YPK_2468";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"YPK_2468";i:14;s:11:"Single gene";i:15;s:7:"2237669";i:16;s:8:"YPK_2468";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3220478-3220624";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3218688-3219168";i:10;s:1:"-";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:8:"YPK_2921";i:14;s:6:"Operon";i:15;s:6:"399507";i:16;s:44:"YPK_2919(moaE);YPK_2920(moaD);YPK_2921(moaC)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3331346-3331409";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3331509-3331893";i:10;s:1:"+";i:11;s:8:"YPK_3030";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:8:"YPK_3030";i:14;s:11:"Single gene";i:15;s:7:"2237935";i:16;s:8:"YPK_3030";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3894827-3894964";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3896006-3897614";i:10;s:1:"+";i:11;s:4:"thiP";i:12;s:48:"Thiamine ABC transporter; inner membrane subunit";i:13;s:8:"YPK_3543";i:14;s:6:"Operon";i:15;s:6:"399628";i:16;s:44:"YPK_3542(tbpA);YPK_3543(thiP);YPK_3544(thiQ)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4208006-4208052";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4207150-4207507";i:10;s:1:"+";i:11;s:8:"YPK_3816";i:12;s:0:"";i:13;s:8:"YPK_3816";i:14;s:6:"Operon";i:15;s:6:"399676";i:16;s:35:"YPK_3813;YPK_3814;YPK_3815;YPK_3816";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010465.1";i:2;s:34:"Yersinia pseudotuberculosis YPIII ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4498692-4498954";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4496730-4498623";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"YPK_4073";i:14;s:6:"Operon";i:15;s:6:"399727";i:16;s:23:"YPK_4072;YPK_4073(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
