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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
154114-154209
(+)
preQ1-II
154758-155361 (-)
leuD
3-isopropylmalate dehydratase small subunit (3) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase)
APJL_0139
Operon
DOOR ID:
386445
APJL_0139
(leuD)
,
APJL_0140
(leuC)
View Structure
2
193447-193543
(+)
TPP
193611-194577 (+)
tbpA
Thiamine-binding periplasmic protein
APJL_0175
Single gene
DOOR ID:
2209863
APJL_0175
(tbpA)
View Structure
3
440208-440333
(+)
FMN
440465-441560 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
APJL_0402
Operon
DOOR ID:
386499
APJL_0402
(ribD)
,
APJL_0403
(ribE)
,
APJL_0404
(ribA)
,
APJL_0405
(ribH)
View Structure
4
523169-523340
(+)
lysine
523464-524982 (+)
APJL_0476
Na+/H+ antiporter
APJL_0476
Single gene
DOOR ID:
2209973
APJL_0476
View Structure
5
567935-568027
(+)
TPP
568130-568223 (+)
APJL_0521
APJL_0521
Single gene
DOOR ID:
2209986
APJL_0521
View Structure
6
753869-754038
(-)
MOCO
751375-753850 (-)
torZ
Trimethylamine-N-oxide reductase 2
APJL_0686
Single gene
DOOR ID:
2210033
APJL_0686
(torZ)
View Structure
7
755339-755527
(+)
MOCO
756822-757299 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
APJL_0689
Operon
DOOR ID:
386561
APJL_0689
(moaC)
,
APJL_0690
(moaD)
,
APJL_0691
(moaE)
,
APJL_0692,
APJL_0693
View Structure
8
1230827-1230888
(+)
PreQ1
1230891-1231560 (+)
queC
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
APJL_1111
Operon
DOOR ID:
386649
APJL_1111
(queC)
,
APJL_1112
View Structure
9
1269654-1269760
(-)
glycine
1268177-1269545 (-)
APJL_1146
Na+/alanine symporter
APJL_1146
Operon
DOOR ID:
386658
APJL_1142,
APJL_1143
(pfkA)
,
APJL_1144
(nifS)
,
APJL_1145,
APJL_1146
View Structure
Genome:
Actinobacillus pleuropneumoniae serovar 3 str. JL03
(
NC_010278.1
);
Phylum:
Gammaproteobacteria
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JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"154114-154209";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"154758-155361";i:10;s:1:"-";i:11;s:4:"leuD";i:12;s:104:"3-isopropylmalate dehydratase small subunit (3) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase)";i:13;s:9:"APJL_0139";i:14;s:6:"Operon";i:15;s:6:"386445";i:16;s:31:"APJL_0139(leuD);APJL_0140(leuC)";i:17;s:41:"leucine biosynthetic process [GO:0009098]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"193447-193543";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"193611-194577";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:9:"APJL_0175";i:14;s:11:"Single gene";i:15;s:7:"2209863";i:16;s:15:"APJL_0175(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"440208-440333";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"440465-441560";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"APJL_0402";i:14;s:6:"Operon";i:15;s:6:"386499";i:16;s:63:"APJL_0402(ribD);APJL_0403(ribE);APJL_0404(ribA);APJL_0405(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"523169-523340";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"523464-524982";i:10;s:1:"+";i:11;s:9:"APJL_0476";i:12;s:17:"Na+/H+ antiporter";i:13;s:9:"APJL_0476";i:14;s:11:"Single gene";i:15;s:7:"2209973";i:16;s:9:"APJL_0476";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"567935-568027";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"568130-568223";i:10;s:1:"+";i:11;s:9:"APJL_0521";i:12;s:0:"";i:13;s:9:"APJL_0521";i:14;s:11:"Single gene";i:15;s:7:"2209986";i:16;s:9:"APJL_0521";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"753869-754038";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"751375-753850";i:10;s:1:"-";i:11;s:4:"torZ";i:12;s:34:"Trimethylamine-N-oxide reductase 2";i:13;s:9:"APJL_0686";i:14;s:11:"Single gene";i:15;s:7:"2210033";i:16;s:15:"APJL_0686(torZ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"755339-755527";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"756822-757299";i:10;s:1:"+";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:9:"APJL_0689";i:14;s:6:"Operon";i:15;s:6:"386561";i:16;s:67:"APJL_0689(moaC);APJL_0690(moaD);APJL_0691(moaE);APJL_0692;APJL_0693";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1230827-1230888";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1230891-1231560";i:10;s:1:"+";i:11;s:4:"queC";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:9:"APJL_1111";i:14;s:6:"Operon";i:15;s:6:"386649";i:16;s:25:"APJL_1111(queC);APJL_1112";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010278.1";i:2;s:52:"Actinobacillus pleuropneumoniae serovar 3 str. JL03 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1269654-1269760";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1268177-1269545";i:10;s:1:"-";i:11;s:9:"APJL_1146";i:12;s:21:"Na+/alanine symporter";i:13;s:9:"APJL_1146";i:14;s:6:"Operon";i:15;s:6:"386658";i:16;s:61:"APJL_1142;APJL_1143(pfkA);APJL_1144(nifS);APJL_1145;APJL_1146";i:17;s:0:"";i:18;s:15:"View Structure ";}}
