Genome: Bacillus weihenstephanensis KBAB4 (NC_010184.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 163232-163387 (+)glmS163577-165380 (+)BcerKBAB4_0152

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BcerKBAB4_0152Single gene

DOOR ID: 2206625		BcerKBAB4_0152 View Structure
2 175465-175578 (-)SAM174566-175379 (-)BcerKBAB4_0161

Lipoprotein		BcerKBAB4_0161Operon

DOOR ID: 385248		BcerKBAB4_0159,
BcerKBAB4_0160,
BcerKBAB4_0161		 View Structure
3 184056-184161 (+)SAM184298-185216 (+)BcerKBAB4_0170

Binding-protein-dependent transport systems inner membrane component		BcerKBAB4_0170Operon

DOOR ID: 385250		BcerKBAB4_0170,
BcerKBAB4_0171,
BcerKBAB4_0172,
BcerKBAB4_0173,
BcerKBAB4_0174		 View Structure
4 195600-195704 (-)SAM193823-195464 (-)BcerKBAB4_0180

4-phytase (6)		BcerKBAB4_0180Single gene

DOOR ID: 2206638		BcerKBAB4_0180 View Structure
5 262218-262319 (+)purine262484-264023 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BcerKBAB4_0247Single gene

DOOR ID: 2206673		BcerKBAB4_0247 (guaA) View Structure
6 264179-264280 (+)purine264408-265734 (+)BcerKBAB4_0248

Xanthine/uracil/vitamin C permease		BcerKBAB4_0248Single gene

DOOR ID: 2206674		BcerKBAB4_0248 View Structure
7 312424-312525 (+)purine312635-313121 (+)BcerKBAB4_0269

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BcerKBAB4_0269Operon

DOOR ID: 385267		BcerKBAB4_0269,
BcerKBAB4_0270,
BcerKBAB4_0271,
BcerKBAB4_0272,
BcerKBAB4_0273,
BcerKBAB4_0274,
BcerKBAB4_0275,
BcerKBAB4_0276,
BcerKBAB4_0277,
BcerKBAB4_0278 (purN),
BcerKBAB4_0279 (purH)		 View Structure
8 337971-338075 (+)SAM338201-339221 (+)BcerKBAB4_0292

Methionine import ATP-binding protein MetN 		BcerKBAB4_0292Operon

DOOR ID: 385270		BcerKBAB4_0292,
BcerKBAB4_0293,
BcerKBAB4_0294		 View Structure
9 359732-359833 (-)purine358337-359534 (-)BcerKBAB4_0312

Na+ dependent nucleoside transporter domain protein		BcerKBAB4_0312Single gene

DOOR ID: 2206696		BcerKBAB4_0312 View Structure
10 390765-390877 (-)SAM390046-390679 (-)BcerKBAB4_0341

Cyclase family protein		BcerKBAB4_0341Single gene

DOOR ID: 2206713		BcerKBAB4_0341 View Structure
11 413536-413645 (+)TPP413717-414527 (+)BcerKBAB4_0357

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		BcerKBAB4_0357Operon

DOOR ID: 385281		BcerKBAB4_0357,
BcerKBAB4_0358 (thiE)		 View Structure
12 416914-416998 (+)c-di-GMP-I417131-418871 (+)BcerKBAB4_0360

Methyl-accepting chemotaxis sensory transducer		BcerKBAB4_0360single gene

DOOR ID: 2206726		BcerKBAB4_0360 View Structure
13 418933-419034 (+)TPP419134-419455 (+)BcerKBAB4_0361

BcerKBAB4_0361Operon

DOOR ID: 385282		BcerKBAB4_0361,
BcerKBAB4_0362,
BcerKBAB4_0363,
BcerKBAB4_0364		 View Structure
14 739122-739234 (+)TPP739487-740183 (+)BcerKBAB4_0641

Aminopyrimidine aminohydrolase 		BcerKBAB4_0641Operon

DOOR ID: 385333		BcerKBAB4_0641,
BcerKBAB4_0642,
BcerKBAB4_0643,
BcerKBAB4_0644,
BcerKBAB4_0645,
BcerKBAB4_0646,
BcerKBAB4_0647,
BcerKBAB4_0648 (thiG),
BcerKBAB4_0649,
BcerKBAB4_0650		 View Structure
15 739295-739398 (+)TPP739487-740183 (+)BcerKBAB4_0641

Aminopyrimidine aminohydrolase 		BcerKBAB4_0641Operon

DOOR ID: 385333		BcerKBAB4_0641,
BcerKBAB4_0642,
BcerKBAB4_0643,
BcerKBAB4_0644,
BcerKBAB4_0645,
BcerKBAB4_0646,
BcerKBAB4_0647,
BcerKBAB4_0648 (thiG),
BcerKBAB4_0649,
BcerKBAB4_0650		 View Structure
16 747302-747448 (+)ydaO-yuaA747541-747928 (+)BcerKBAB4_0651

Group-specific protein		BcerKBAB4_0651Operon

DOOR ID: 385334		BcerKBAB4_0651,
BcerKBAB4_0652		 View Structure
17 748438-748583 (+)ydaO-yuaA748677-748782 (+)BcerKBAB4_0653

BcerKBAB4_0653Single gene

DOOR ID: 2206864		BcerKBAB4_0653 View Structure
18 761588-761693 (-)SAM760387-761500 (-)BcerKBAB4_0665

Periplasmic binding protein/LacI transcriptional regulator		BcerKBAB4_0665Operon

DOOR ID: 385336		BcerKBAB4_0662,
BcerKBAB4_0663,
BcerKBAB4_0664,
BcerKBAB4_0665		 View Structure
19 841107-841288 (-)lysine839535-840960 (-)BcerKBAB4_0755

Amino acid permease-associated region		BcerKBAB4_0755Operon

DOOR ID: 385355		BcerKBAB4_0754,
BcerKBAB4_0755		 View Structure
20 963832-963938 (+)SAM964021-965080 (+)BcerKBAB4_0878

Luciferase family protein		BcerKBAB4_0878Operon

DOOR ID: 385377		BcerKBAB4_0878,
BcerKBAB4_0879		 View Structure
21 1053373-1053463 (+)c-di-GMP-I1053580-1059991 (+)BcerKBAB4_0982

LPXTG-motif cell wall anchor domain		BcerKBAB4_0982single gene

DOOR ID: 2207015		BcerKBAB4_0982 View Structure
22 1297433-1297605 (-)yybP-ykoY1296558-1297353 (-)BcerKBAB4_1224

Integral membrane protein TerC		BcerKBAB4_1224Single gene

DOOR ID: 2207150		BcerKBAB4_1224 View Structure
23 1327390-1327433 (+)PreQ11327526-1328189 (+)BcerKBAB4_1256

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BcerKBAB4_1256Operon

DOOR ID: 385440		BcerKBAB4_1256,
BcerKBAB4_1257,
BcerKBAB4_1258,
BcerKBAB4_1259		 View Structure
24 1399226-1399407 (+)lysine1399587-1400904 (+)BcerKBAB4_1342

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		BcerKBAB4_1342Single gene

DOOR ID: 2207209		BcerKBAB4_1342 View Structure
25 1401022-1401130 (+)SAM1401202-1401346 (+)BcerKBAB4_1343

BcerKBAB4_1343Single gene

DOOR ID: 2207210		BcerKBAB4_1343 View Structure
26 1413788-1413893 (+)SAM1413987-1415304 (+)BcerKBAB4_1357

Na+/H+ antiporter NhaC		BcerKBAB4_1357Single gene

DOOR ID: 2207216		BcerKBAB4_1357 View Structure
27 1460501-1460640 (+)FMN1460803-1461382 (+)BcerKBAB4_1404

Riboflavin transporter		BcerKBAB4_1404Single gene

DOOR ID: 2207247		BcerKBAB4_1404 View Structure
28 1536303-1536404 (+)purine1536511-1537105 (+)BcerKBAB4_1490

Xanthine phosphoribosyltransferase (XPRTase) (2)		BcerKBAB4_1490Operon

DOOR ID: 385479		BcerKBAB4_1490,
BcerKBAB4_1491		 View Structure
29 1549156-1549321 (+)ykoK1549675-1550401 (+)BcerKBAB4_1503

Cation transporter; putative		BcerKBAB4_1503Single gene

DOOR ID: 2207284		BcerKBAB4_1503 View Structure
30 1571382-1571426 (+)PreQ11571432-1571921 (+)BcerKBAB4_1513

BcerKBAB4_1513Single gene

DOOR ID: 2207289		BcerKBAB4_1513 View Structure
31 1720544-1720730 (-)lysine1719112-1720342 (-)BcerKBAB4_1675

Aspartokinase 		BcerKBAB4_1675Single gene

DOOR ID: 2207360		BcerKBAB4_1675 View Structure
32 1778973-1779119 (+)ydaO-yuaA1779263-1781090 (+)BcerKBAB4_1740

Amino acid permease		BcerKBAB4_1740Single gene

DOOR ID: 2207392		BcerKBAB4_1740 View Structure
33 2253218-2253337 (-)glycine2251742-2253110 (-)BcerKBAB4_2187

Amino acid carrier protein		BcerKBAB4_2187Single gene

DOOR ID: 2207630		BcerKBAB4_2187 View Structure
34 2573923-2574038 (-)SAM2573234-2573783 (-)BcerKBAB4_2500

BcerKBAB4_2500Operon

DOOR ID: 385637		BcerKBAB4_2497,
BcerKBAB4_2498,
BcerKBAB4_2499,
BcerKBAB4_2500		 View Structure
35 2598510-2598615 (-)TPP2597698-2598385 (-)BcerKBAB4_2523

Aminopyrimidine aminohydrolase 		BcerKBAB4_2523Single gene

DOOR ID: 2207831		BcerKBAB4_2523 View Structure
36 2906366-2906558 (+)lysine2906670-2908137 (+)BcerKBAB4_2856

Amino acid permease-associated region		BcerKBAB4_2856Operon

DOOR ID: 385697		BcerKBAB4_2856,
BcerKBAB4_2857,
BcerKBAB4_2858		 View Structure
37 2977146-2977247 (-)SAM2975851-2977057 (-)BcerKBAB4_2929

Peptidase M20 domain-containing protein 2		BcerKBAB4_2929Single gene

DOOR ID: 2208033		BcerKBAB4_2929 View Structure
38 3086974-3087072 (-)SAM3086614-3086875 (-)BcerKBAB4_3037

BcerKBAB4_3037Single gene

DOOR ID: 2208099		BcerKBAB4_3037 View Structure
39 3101616-3101719 (-)purine3100556-3101438 (-)BcerKBAB4_3050

Purine or other phosphorylase family 1		BcerKBAB4_3050Single gene

DOOR ID: 2208107		BcerKBAB4_3050 View Structure
40 3134671-3134815 (+)ydaO-yuaA3134915-3135059 (+)BcerKBAB4_3086

BcerKBAB4_3086Single gene

DOOR ID: 2208129		BcerKBAB4_3086 View Structure
41 3284319-3284425 (-)SAM3283580-3284249 (-)BcerKBAB4_3235

Polar amino acid ABC transporter; inner membrane subunit		BcerKBAB4_3235Operon

DOOR ID: 385752		BcerKBAB4_3232,
BcerKBAB4_3233,
BcerKBAB4_3234,
BcerKBAB4_3235		 View Structure
42 3622021-3622122 (-)purine3621061-3621802 (-)BcerKBAB4_3563

Transcriptional regulator; GntR family		BcerKBAB4_3563Single gene

DOOR ID: 2208361		BcerKBAB4_3563 View Structure
43 3874507-3874695 (+)cobalamin3874824-3877113 (+)BcerKBAB4_3831

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BcerKBAB4_3831Single gene

DOOR ID: 2208461		BcerKBAB4_3831 View Structure
44 3906204-3906344 (-)SAM3904936-3906115 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BcerKBAB4_3862Operon

DOOR ID: 385866		BcerKBAB4_3861 (mtnA),
BcerKBAB4_3862 (mtnK)		 View Structure
45 3908537-3908642 (+)SAM3908706-3909951 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BcerKBAB4_3865Operon

DOOR ID: 385867		BcerKBAB4_3865 (mtnW),
BcerKBAB4_3866 (mtnX),
BcerKBAB4_3867 (mtnB),
BcerKBAB4_3868		 View Structure
46 3971775-3971918 (+)FMN3972227-3973340 (+)BcerKBAB4_3941

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BcerKBAB4_3941Operon

DOOR ID: 385878		BcerKBAB4_3941,
BcerKBAB4_3942,
BcerKBAB4_3943,
BcerKBAB4_3944 (ribH)		 View Structure
47 4010193-4010358 (+)ykoK4010690-4013396 (+)BcerKBAB4_3981

Magnesium-translocating P-type ATPase		BcerKBAB4_3981Single gene

DOOR ID: 2208533		BcerKBAB4_3981 View Structure
48 4112774-4112883 (-)SAM4110870-4112703 (-)BcerKBAB4_4109

Homocysteine S-methyltransferase		BcerKBAB4_4109Operon

DOOR ID: 385905		BcerKBAB4_4107,
BcerKBAB4_4108,
BcerKBAB4_4109		 View Structure
49 4113086-4113199 (+)SAM4113288-4114401 (+)BcerKBAB4_4110

Cystathionine gamma-synthase (8)		BcerKBAB4_4110Operon

DOOR ID: 385906		BcerKBAB4_4110,
BcerKBAB4_4111		 View Structure
50 4578189-4578310 (-)SAM4576819-4578019 (-)BcerKBAB4_4594

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BcerKBAB4_4594Single gene

DOOR ID: 2208781		BcerKBAB4_4594 View Structure
51 4618497-4618598 (+)TPP4618684-4619287 (+)BcerKBAB4_4644

Putative proton-coupled thiamine transporter YuaJ		BcerKBAB4_4644Single gene

DOOR ID: 2208807		BcerKBAB4_4644 View Structure
52 4781146-4781253 (-)SAM4779811-4780837 (-)BcerKBAB4_4809

Methionine import ATP-binding protein MetN 		BcerKBAB4_4809Operon

DOOR ID: 386058		BcerKBAB4_4806,
BcerKBAB4_4807,
BcerKBAB4_4808,
BcerKBAB4_4809		 View Structure
53 4869306-4869365 (+)fluoride4869419-4869824 (+)BcerKBAB4_4903

Putative fluoride ion transporter CrcB		BcerKBAB4_4903Operon

DOOR ID: 386080		BcerKBAB4_4903,
BcerKBAB4_4904		 View Structure
54 4983056-4983171 (-)TPP4981182-4982943 (-)BcerKBAB4_5018

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BcerKBAB4_5018Single gene

DOOR ID: 2208970		BcerKBAB4_5018 View Structure
55 5173641-5173745 (-)SAM5172250-5173549 (-)BcerKBAB4_5199

O-acetylhomoserine/O-acetylserine sulfhydrylase (7)		BcerKBAB4_5199Operon

DOOR ID: 386136		BcerKBAB4_5198,
BcerKBAB4_5199		 View Structure