Genome: Clostridium phytofermentans ISDg (NC_010001.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 128414-128462 (-)PreQ1127889-128408 (-)Cphy_0096

Cphy_0096Single gene

DOOR ID: 2171573		Cphy_0096 View Structure
2 437445-437582 (+)FMN437840-438587 (+)Cphy_0344

Riboflavin transporter		Cphy_0344Single gene

DOOR ID: 2171714		Cphy_0344 View Structure
3 719539-719770 (+)cobalamin719940-720960 (+)Cphy_0560

Periplasmic binding protein		Cphy_0560Operon

DOOR ID: 370064		Cphy_0560,
Cphy_0561,
Cphy_0562		 View Structure
4 835881-835983 (+)ZMP-ZTP836074-837631 (+)purH

Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]		Cphy_0643Single gene

DOOR ID: 2171878		Cphy_0643 (purH) View Structure
5 943867-943968 (-)TPP943158-943824 (-)Cphy_0729

Proton-coupled thiamine transporter YuaJ		Cphy_0729Single gene

DOOR ID: 2171929		Cphy_0729 View Structure
6 1345206-1345408 (+)lysine1345518-1347243 (+)Cphy_1066

Na+/H+ antiporter NhaC		Cphy_1066Single gene

DOOR ID: 2172091		Cphy_1066 View Structure
7 1396065-1396269 (+)cobalamin1396494-1397562 (+)Cphy_1105

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (1)		Cphy_1105Operon

DOOR ID: 370157		Cphy_1105,
Cphy_1106,
Cphy_1107,
Cphy_1108,
Cphy_1109,
Cphy_1110		 View Structure
8 1430070-1430158 (+)c-di-GMP-I1430299-1432699 (+)Cphy_1136

Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)		Cphy_1136single gene

DOOR ID: 2172117		Cphy_1136 View Structure
9 1449390-1449503 (+)TPP1449952-1450252 (+)Cphy_1150

Cphy_1150Operon

DOOR ID: 370166		Cphy_1150,
Cphy_1151		 View Structure
10 1707681-1707886 (+)cobalamin1708043-1709255 (+)Cphy_1368

Glutamyl-tRNA reductase 1 (GluTR 1) (0)		Cphy_1368Operon

DOOR ID: 370202		Cphy_1368,
Cphy_1369,
Cphy_1370 (hemC),
Cphy_1371,
Cphy_1372,
Cphy_1373		 View Structure
11 1723912-1724118 (+)cobalamin1724326-1725226 (+)Cphy_1383

Cobalt ABC transporter; inner membrane subunit CbiQ		Cphy_1383Operon

DOOR ID: 370205		Cphy_1383,
Cphy_1384		 View Structure
12 1913586-1913673 (+)c-di-GMP-I1913685-1914504 (+)Cphy_1556

Transglutaminase domain protein		Cphy_1556single gene

DOOR ID: 2172316		Cphy_1556 View Structure
13 2073734-2073865 (+)ydaO-yuaA2074007-2075246 (+)Cphy_1689

Sodium/hydrogen exchanger		Cphy_1689Operon

DOOR ID: 370261		Cphy_1689,
Cphy_1690		 View Structure
14 2639717-2639822 (-)Nico2637082-2639602 (-)Cphy_2132

ATPase; P-type (Transporting); HAD superfamily; subfamily IC 		Cphy_2132Single gene

DOOR ID: 2172628		Cphy_2132 View Structure
15 3684461-3684636 (-)ykoK3682756-3684088 (-)Cphy_3016

Magnesium transporter MgtE		Cphy_3016Single gene

DOOR ID: 2173021		Cphy_3016 View Structure
16 3806127-3806199 (-)fluoride3804901-3806074 (-)Cphy_3111

Sodium/hydrogen exchanger		Cphy_3111Operon

DOOR ID: 370537		Cphy_3109,
Cphy_3110,
Cphy_3111		 View Structure
17 4190895-4191058 (+)glmS4191104-4192949 (+)Cphy_3414

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Cphy_3414Single gene

DOOR ID: 2173226		Cphy_3414 View Structure
18 4294671-4294846 (-)lysine4293664-4294549 (-)Cphy_3482

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Cphy_3482Single gene

DOOR ID: 2173262		Cphy_3482 View Structure
19 4762063-4762158 (-)SAM4760726-4761917 (-)Cphy_3874

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Cphy_3874Single gene

DOOR ID: 2173438		Cphy_3874 View Structure