Genome: Alkaliphilus oremlandii OhILAs (NC_009922.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 56104-56237 (-)ydaO-yuaA55319-55952 (-)Clos_0046

Clos_0046Single gene

DOOR ID: 2152073		Clos_0046 View Structure
2 56722-56769 (+)PreQ156774-57257 (+)Clos_0047

Clos_0047Single gene

DOOR ID: 2152074		Clos_0047 View Structure
3 86373-86475 (+)glycine86841-87948 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Clos_0065Operon

DOOR ID: 361287		Clos_0065 (gcvT),
Clos_0066,
Clos_0067,
Clos_0068		 View Structure
4 86479-86554 (+)glycine86841-87948 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Clos_0065Operon

DOOR ID: 361287		Clos_0065 (gcvT),
Clos_0066,
Clos_0067,
Clos_0068		 View Structure
5 102661-102766 (+)SAM103111-104008 (+)Clos_0078

Methylenetetrahydrofolate reductase (0)		Clos_0078Operon

DOOR ID: 361290		Clos_0078,
Clos_0079,
Clos_0080		 View Structure
6 102837-102950 (+)SAM103111-104008 (+)Clos_0078

Methylenetetrahydrofolate reductase (0)		Clos_0078Operon

DOOR ID: 361290		Clos_0078,
Clos_0079,
Clos_0080		 View Structure
7 283208-283301 (-)TPP282493-283120 (-)Clos_0240

Putative proton-coupled thiamine transporter YuaJ		Clos_0240Single gene

DOOR ID: 2152153		Clos_0240 View Structure
8 322816-322996 (+)cobalamin323123-324554 (-)Clos_0274

Na+/H+ antiporter NhaC		Clos_0274Single gene

DOOR ID: 2152173		Clos_0274 View Structure
9 373263-373442 (+)cobalamin373606-374659 (+)Clos_0318

Periplasmic binding protein		Clos_0318Operon

DOOR ID: 361336		Clos_0318,
Clos_0319,
Clos_0320,
Clos_0321,
Clos_0322,
Clos_0323		 View Structure
10 582547-582648 (+)purine582872-584330 (+)Clos_0533

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		Clos_0533Operon

DOOR ID: 361372		Clos_0533,
Clos_0534		 View Structure
11 585464-585565 (+)purine585738-587091 (+)Clos_0535

Xanthine/uracil/vitamin C permease		Clos_0535Operon

DOOR ID: 361373		Clos_0535,
Clos_0536,
Clos_0537,
Clos_0538,
Clos_0539,
Clos_0540,
Clos_0541 (purH),
Clos_0542		 View Structure
12 585550-585652 (+)ykkC-yxkD585738-587091 (+)Clos_0535

Xanthine/uracil/vitamin C permease		Clos_0535Operon

DOOR ID: 361373		Clos_0535,
Clos_0536,
Clos_0537,
Clos_0538,
Clos_0539,
Clos_0540,
Clos_0541 (purH),
Clos_0542		 View Structure
13 597392-597495 (-)SAM596334-597186 (-)Clos_0544

Lipoprotein		Clos_0544Single gene

DOOR ID: 2152263		Clos_0544 View Structure
14 687767-687960 (+)cobalamin688123-689299 (+)Clos_0622

YidE/YbjL duplication		Clos_0622Operon

DOOR ID: 361391		Clos_0622,
Clos_0623,
Clos_0624		 View Structure
15 798291-798473 (+)lysine798624-799467 (+)Clos_0722

Extracellular solute-binding protein family 3		Clos_0722Operon

DOOR ID: 361415		Clos_0722,
Clos_0723,
Clos_0724		 View Structure
16 847488-847596 (+)TPP847746-849060 (+)Clos_0766

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Clos_0766Operon

DOOR ID: 361423		Clos_0766,
Clos_0767		 View Structure
17 941190-941356 (+)cobalamin941531-942923 (+)Clos_0862

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)		Clos_0862Operon

DOOR ID: 361445		Clos_0862,
Clos_0863		 View Structure
18 947745-947927 (-)lysine946183-947563 (-)Clos_0865

Amino acid permease-associated region		Clos_0865Operon

DOOR ID: 361446		Clos_0864,
Clos_0865		 View Structure
19 1001058-1001250 (+)cobalamin1001371-1002355 (+)Clos_0915

Periplasmic binding protein		Clos_0915Operon

DOOR ID: 361454		Clos_0915,
Clos_0916,
Clos_0917		 View Structure
20 1037045-1037222 (+)cobalamin1037384-1038569 (+)Clos_0948

Iron compound ABC transporter; periplasmic iron compound-binding protein; putative		Clos_0948Operon

DOOR ID: 361462		Clos_0948,
Clos_0949,
Clos_0950,
Clos_0951		 View Structure
21 1042809-1042917 (+)glycine1043107-1043503 (+)Clos_0953

Component of glycine reductase complex		Clos_0953Single gene

DOOR ID: 2152433		Clos_0953 View Structure
22 1112785-1112962 (+)cobalamin1113217-1113946 (+)Clos_1011

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Clos_1011Operon

DOOR ID: 361475		Clos_1011,
Clos_1012,
Clos_1013,
Clos_1014,
Clos_1015,
Clos_1016 (cbiD),
Clos_1017,
Clos_1018,
Clos_1019,
Clos_1020,
Clos_1021,
Clos_1022,
Clos_1023		 View Structure
23 1242223-1242295 (+)fluoride1242349-1243522 (+)Clos_1148

Sodium/hydrogen exchanger		Clos_1148Single gene

DOOR ID: 2152497		Clos_1148 View Structure
24 1397256-1397351 (+)ykkC-yxkD1397413-1398121 (+)Clos_1298

B3/4 domain protein		Clos_1298Operon

DOOR ID: 361536		Clos_1298,
Clos_1299		 View Structure
25 1429512-1429691 (+)cobalamin1430676-1431681 (+)Clos_1324

Glutamyl-tRNA reductase (GluTR) (0)		Clos_1324Operon

DOOR ID: 361543		Clos_1324,
Clos_1325,
Clos_1326,
Clos_1327 (hemC),
Clos_1328,
Clos_1329,
Clos_1330		 View Structure
26 1429856-1430055 (+)cobalamin1430676-1431681 (+)Clos_1324

Glutamyl-tRNA reductase (GluTR) (0)		Clos_1324Operon

DOOR ID: 361543		Clos_1324,
Clos_1325,
Clos_1326,
Clos_1327 (hemC),
Clos_1328,
Clos_1329,
Clos_1330		 View Structure
27 1736673-1736753 (-)c-di-GMP-I1736115-1736511 (-)Clos_1635

Uncharacterized protein		Clos_1635operon

DOOR ID: 361604		Clos_1634,
Clos_1635		 View Structure
28 2361811-2361990 (-)cobalamin2360721-2361672 (-)Clos_2212

Cobalamin biosynthesis protein CobD		Clos_2212Operon

DOOR ID: 361714		Clos_2206,
Clos_2207,
Clos_2208,
Clos_2209,
Clos_2210,
Clos_2211,
Clos_2212		 View Structure
29 2504950-2505124 (-)cobalamin2503784-2504828 (-)Clos_2330

Periplasmic binding protein		Clos_2330Operon

DOOR ID: 361739		Clos_2326,
Clos_2327,
Clos_2328,
Clos_2329,
Clos_2330		 View Structure
30 2619444-2619546 (+)THF2619616-2620177 (+)Clos_2421

Signal transduction histidine kinase; LytS		Clos_2421Operon

DOOR ID: 361760		Clos_2421,
Clos_2422		 View Structure
31 2630463-2630586 (+)MOCO2630715-2631612 (+)Clos_2434

Extracellular solute-binding protein family 1		Clos_2434Single gene

DOOR ID: 2152955		Clos_2434 View Structure
32 2674995-2675114 (-)FMN2674223-2674838 (-)Clos_2474

Riboflavin transporter		Clos_2474Single gene

DOOR ID: 2152970		Clos_2474 View Structure
33 2736943-2737050 (-)SAM2735496-2736684 (-)Clos_2531

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Clos_2531Single gene

DOOR ID: 2152991		Clos_2531 View Structure
34 2929517-2929629 (-)TPP2928421-2929204 (-)Clos_2695

Phosphomethylpyrimidine kinase		Clos_2695Operon

DOOR ID: 361821		Clos_2692,
Clos_2693,
Clos_2694,
Clos_2695		 View Structure
35 3087240-3087410 (-)glmS3085265-3087092 (-)Clos_2836

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Clos_2836Single gene

DOOR ID: 2153117		Clos_2836 View Structure