Genome: Bacillus amyloliquefaciens FZB42 (NC_009725.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 203859-204030 (+)glmS204119-205922 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		RBAM_002320Single gene

DOOR ID: 2117485		RBAM_002320 (glmS) View Structure
2 454343-454486 (+)ydaO-yuaA454642-456463 (+)ydaO

YdaO		RBAM_004540Single gene

DOOR ID: 2117589		RBAM_004540 (ydaO) View Structure
3 545425-545528 (+)TPP545605-546070 (+)RBAM_005680

RBAM_005680Operon

DOOR ID: 344978		RBAM_005680,
RBAM_005690,
RBAM_005700,
RBAM_005710,
RBAM_005720		 View Structure
4 593813-593912 (-)purine592597-593758 (-)ydhL

YdhL		RBAM_006160Single gene

DOOR ID: 2117678		RBAM_006160 (ydhL) View Structure
5 656544-656645 (+)purine656776-658099 (+)pbuG

PbuG		RBAM_006790Single gene

DOOR ID: 2117704		RBAM_006790 (pbuG) View Structure
6 660340-660441 (+)purine660573-661062 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		RBAM_006840Operon

DOOR ID: 344995		RBAM_006840 (purE),
RBAM_006850 (purK),
RBAM_006860 (purB),
RBAM_006870 (purC),
RBAM_006880 (purS),
RBAM_006890 (purQ),
RBAM_006900 (purL),
RBAM_006910 (purF),
RBAM_006920 (purM),
RBAM_006930 (purN),
RBAM_006940 (purH),
RBAM_006950 (purD)		 View Structure
7 885297-885407 (+)TPP885528-887301 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		RBAM_009060Single gene

DOOR ID: 2117800		RBAM_009060 (thiC) View Structure
8 1081978-1082099 (-)SAM1080046-1081888 (-)yitJ

YitJ		RBAM_011020Single gene

DOOR ID: 2117906		RBAM_011020 (yitJ) View Structure
9 1142898-1143006 (+)TPP1143090-1143801 (+)tenA

Aminopyrimidine aminohydrolase 		RBAM_011660Operon

DOOR ID: 345079		RBAM_011660 (tenA),
RBAM_011670 (tenI),
RBAM_011680 (goxB),
RBAM_011690 (thiS),
RBAM_011700 (thiG),
RBAM_011710 (thiF),
RBAM_011720 (yjbV)		 View Structure
10 1161511-1161636 (+)SAM1161705-1162827 (+)yjcI

YjcI		RBAM_011930Operon

DOOR ID: 345083		RBAM_011930 (yjcI),
RBAM_011940 (yjcJ)		 View Structure
11 1253499-1253607 (+)ykkC-yxkD1253673-1254012 (+)ykkC

YkkC		RBAM_012900Operon

DOOR ID: 345105		RBAM_012900 (ykkC),
RBAM_012910 (ykkD)		 View Structure
12 1267675-1267829 (-)SAM1265302-1267591 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		RBAM_013040Single gene

DOOR ID: 2117982		RBAM_013040 (metE) View Structure
13 1273166-1273279 (-)TPP1272386-1272986 (-)ykoE

YkoE		RBAM_013090Operon

DOOR ID: 345108		RBAM_013070 (ykoC),
RBAM_013080 (ykoD),
RBAM_013090 (ykoE)		 View Structure
14 1275022-1275187 (+)ykoK1275421-1276777 (+)ykoK

Magnesium transporter MgtE		RBAM_013120Single gene

DOOR ID: 2117987		RBAM_013120 (ykoK) View Structure
15 1283080-1283180 (+)yybP-ykoY1283247-1284060 (+)ykoY

YkoY		RBAM_013210Single gene

DOOR ID: 2117994		RBAM_013210 (ykoY) View Structure
16 1297426-1297580 (-)SAM1296131-1297316 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		RBAM_013340Operon

DOOR ID: 345113		RBAM_013330 (mtnA),
RBAM_013340 (mtnK)		 View Structure
17 1299777-1299876 (+)SAM1299930-1301172 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		RBAM_013370Operon

DOOR ID: 345114		RBAM_013370 (mtnW),
RBAM_013380 (mtnX),
RBAM_013390 (mtnB),
RBAM_013400 (mtnD)		 View Structure
18 1312567-1312611 (+)PreQ11312620-1313367 (+)ykvJ

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		RBAM_013490Operon

DOOR ID: 345116		RBAM_013490 (ykvJ),
RBAM_013500 (ykvK),
RBAM_013510 (ykvL),
RBAM_013520 (ykvM)		 View Structure
19 1522149-1522254 (+)TPP1522330-1523611 (+)ylmB

YlmB		RBAM_015180Operon

DOOR ID: 345147		RBAM_015180 (ylmB),
RBAM_015190 (ylmC)		 View Structure
20 1544814-1544918 (+)SAM1545044-1545746 (+)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		RBAM_015400Operon

DOOR ID: 345151		RBAM_015400 (cysH),
RBAM_015410 (cysP),
RBAM_015420 (sat),
RBAM_015430 (cysC)		 View Structure
21 2001707-2001799 (-)SAM2000568-2001585 (-)yoaD

YoaD		RBAM_018760Operon

DOOR ID: 345213		RBAM_018740 (yoaB),
RBAM_018750 (yoaC),
RBAM_018760 (yoaD)		 View Structure
22 2130077-2130176 (-)purine2129392-2129977 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		RBAM_020260Operon

DOOR ID: 345245		RBAM_020250 (pbuX),
RBAM_020260 (xpt)		 View Structure
23 2216205-2216339 (-)FMN2215484-2216057 (-)ypaA

Riboflavin transporter		RBAM_021200Single gene

DOOR ID: 2118306		RBAM_021200 (ypaA) View Structure
24 2236180-2236326 (-)FMN2234932-2236048 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		RBAM_021420Operon

DOOR ID: 345268		RBAM_021390 (ribH),
RBAM_021400 (ribA),
RBAM_021410 (ribE),
RBAM_021420 (ribD)		 View Structure
25 2422930-2423030 (-)glycine2421650-2422751 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		RBAM_022890Operon

DOOR ID: 345299		RBAM_022870 (gcvPB),
RBAM_022880 (gcvPA),
RBAM_022890 (gcvT)		 View Structure
26 2674294-2674473 (-)lysine2672938-2674168 (-)lysC

Aspartokinase 		RBAM_025540Single gene

DOOR ID: 2118441		RBAM_025540 (lysC) View Structure
27 2898383-2898522 (-)SAM2897010-2898213 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		RBAM_027570Single gene

DOOR ID: 2118533		RBAM_027570 (metK) View Structure
28 2928010-2928110 (+)TPP2928210-2928792 (+)yuaJ

YuaJ		RBAM_028100Single gene

DOOR ID: 2118546		RBAM_028100 (yuaJ) View Structure
29 3103091-3103197 (-)SAM3101959-3102985 (-)yusC

Methionine import ATP-binding protein MetN 		RBAM_029830Operon

DOOR ID: 345437		RBAM_029810 (yusA),
RBAM_029820 (yusB),
RBAM_029830 (yusC)		 View Structure
30 3159616-3159796 (-)lysine3158092-3159505 (-)yvsH

YvsH		RBAM_030450Single gene

DOOR ID: 2118650		RBAM_030450 (yvsH) View Structure
31 3712115-3712216 (-)ykkC-yxkD3711212-3712049 (-)yxkD

YxkD		RBAM_036060Single gene

DOOR ID: 2118856		RBAM_036060 (yxkD) View Structure
32 3717018-3717104 (+)SAM3717182-3718319 (+)yxjG

YxjG		RBAM_036120Single gene

DOOR ID: 2118862		RBAM_036120 (yxjG) View Structure
33 3719596-3719696 (+)purine3719835-3721029 (+)yxjA

Nucleoside permease		RBAM_036140Single gene

DOOR ID: 2118864		RBAM_036140 (yxjA) View Structure
34 3809024-3809104 (-)glycine3807531-3808878 (-)ydgF

YdgF		RBAM_036990Single gene

DOOR ID: 2118900		RBAM_036990 (ydgF) View Structure