Genome: Parvibaculum lavamentivorans DS-1 (NC_009719.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 443012-443091 (-)sam-alpha441781-442972 (-)Plav_0409

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Plav_0409Single gene

DOOR ID: 2114260
Plav_0409 View Structure
2 481212-481394 (+)yybP-ykoY481401-481977 (+)Plav_0447

Plav_0447Single gene

DOOR ID: 2114277
Plav_0447 View Structure
3 549380-549581 (+)cobalamin549660-550569 (+)Plav_0509

Periplasmic binding protein
Plav_0509Operon

DOOR ID: 343258
Plav_0509,
Plav_0510,
Plav_0511
View Structure
4 668593-668795 (+)cobalamin668958-669756 (+)Plav_0605

Thioesterase superfamily protein
Plav_0605Operon

DOOR ID: 343275
Plav_0605,
Plav_0606
View Structure
5 674303-674390 (-)ZMP-ZTP672988-674251 (-)Plav_0608

Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Plav_0608Single gene

DOOR ID: 2114357
Plav_0608 View Structure
6 749158-749258 (+)glycine749449-750592 (+)Plav_0688

Glycine cleavage system T protein
Plav_0688Single gene

DOOR ID: 2114390
Plav_0688 View Structure
7 749262-749367 (+)glycine749449-750592 (+)Plav_0688

Glycine cleavage system T protein
Plav_0688Single gene

DOOR ID: 2114390
Plav_0688 View Structure
8 879336-879575 (-)cobalamin877220-879200 (-)Plav_0812

TonB-dependent receptor plug
Plav_0812Single gene

DOOR ID: 2114438
Plav_0812 View Structure
9 1045550-1045617 (+)glycine1045715-1046375 (-)Plav_0966

Glutathione S-transferase domain
Plav_0966Operon

DOOR ID: 343353
Plav_0966,
Plav_0967
View Structure
10 1504618-1504701 (+)ZMP-ZTP1504721-1505618 (+)Plav_1372

Bifunctional protein FolD [Includes: Methylenetetrahydrofolate dehydrogenase ]
Plav_1372Single gene

DOOR ID: 2114660
Plav_1372 View Structure
11 2046573-2046691 (+)ykkC-yxkD2046783-2047863 (+)Plav_1887

Putative transport protein
Plav_1887Operon

DOOR ID: 343538
Plav_1887,
Plav_1888,
Plav_1889
View Structure
12 2328672-2328784 (+)TPP2328837-2329212 (+)Plav_2148

Plav_2148Operon

DOOR ID: 343606
Plav_2148,
Plav_2149
View Structure
13 2436939-2437000 (+)SAH2437176-2438583 (-)Plav_2268

Integral membrane sensor signal transduction histidine kinase
Plav_2268Operon

DOOR ID: 343635
Plav_2268,
Plav_2269,
Plav_2270
View Structure
14 2671482-2671649 (-)SAH2670184-2670868 (+)Plav_2467

Plav_2467Single gene

DOOR ID: 2115076
Plav_2467 View Structure