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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
682165-682343
(+)
lysine
682437-683748 (+)
Lreu_0612
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
Lreu_0612
Operon
DOOR ID:
316068
Lreu_0612,
Lreu_0613,
Lreu_0614,
Lreu_0615,
Lreu_0616,
Lreu_0617,
Lreu_0618
View Structure
2
830373-830492
(+)
FMN
830609-831188 (+)
Lreu_0758
Riboflavin transporter
Lreu_0758
Single gene
DOOR ID:
2060399
Lreu_0758
View Structure
3
931807-931947
(+)
FMN
932094-933153 (+)
Lreu_0878
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Lreu_0878
Operon
DOOR ID:
316116
Lreu_0878,
Lreu_0879,
Lreu_0880,
Lreu_0881
(ribH)
View Structure
4
1064760-1064865
(+)
TPP
1064922-1065732 (+)
Lreu_1013
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Lreu_1013
Operon
DOOR ID:
316143
Lreu_1013,
Lreu_1014,
Lreu_1015
View Structure
5
1344993-1345105
(-)
SMK_box
1341065-1343486 (-)
leuS
Leucine--tRNA ligase (Leucyl-tRNA synthetase) (LeuRS)
Lreu_1295
Single gene
DOOR ID:
2060566
Lreu_1295
(leuS)
View Structure
6
1554935-1555109
(-)
lysine
1553331-1554807 (-)
Lreu_1500
Lysine:proton symporter; AAT family
Lreu_1500
Single gene
DOOR ID:
2060638
Lreu_1500
View Structure
7
1653385-1653491
(+)
TPP
1653566-1654736 (+)
Lreu_1599
Putative hydroxymethylpyrimidine transporter CytX
Lreu_1599
Single gene
DOOR ID:
2060689
Lreu_1599
View Structure
8
1720673-1720762
(+)
TPP
1720829-1721390 (+)
Lreu_1661
Membrane protein-like protein
Lreu_1661
Operon
DOOR ID:
316266
Lreu_1661,
Lreu_1662,
Lreu_1663
View Structure
9
1880896-1880994
(+)
purine
1881098-1882427 (+)
Lreu_1828
Uracil-xanthine permease
Lreu_1828
Single gene
DOOR ID:
2060770
Lreu_1828
View Structure
10
1943848-1943946
(+)
THF
1944000-1944561 (+)
Lreu_1884
Lreu_1884
Single gene
DOOR ID:
2060808
Lreu_1884
View Structure
Genome:
Lactobacillus reuteri DSM 20016
(
NC_009513.1
);
Phylum:
Firmicutes
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009513.1";i:2;s:32:"Lactobacillus reuteri DSM 20016 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1344993-1345105";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1341065-1343486";i:10;s:1:"-";i:11;s:4:"leuS";i:12;s:54:"Leucine--tRNA ligase (Leucyl-tRNA synthetase) (LeuRS)";i:13;s:9:"Lreu_1295";i:14;s:11:"Single gene";i:15;s:7:"2060566";i:16;s:15:"Lreu_1295(leuS)";i:17;s:39:"leucyl-tRNA aminoacylation [GO:0006429]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009513.1";i:2;s:32:"Lactobacillus reuteri DSM 20016 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1554935-1555109";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1553331-1554807";i:10;s:1:"-";i:11;s:9:"Lreu_1500";i:12;s:35:"Lysine:proton symporter; AAT family";i:13;s:9:"Lreu_1500";i:14;s:11:"Single gene";i:15;s:7:"2060638";i:16;s:9:"Lreu_1500";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009513.1";i:2;s:32:"Lactobacillus reuteri DSM 20016 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1653385-1653491";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1653566-1654736";i:10;s:1:"+";i:11;s:9:"Lreu_1599";i:12;s:49:"Putative hydroxymethylpyrimidine transporter CytX";i:13;s:9:"Lreu_1599";i:14;s:11:"Single gene";i:15;s:7:"2060689";i:16;s:9:"Lreu_1599";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009513.1";i:2;s:32:"Lactobacillus reuteri DSM 20016 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1720673-1720762";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1720829-1721390";i:10;s:1:"+";i:11;s:9:"Lreu_1661";i:12;s:29:"Membrane protein-like protein";i:13;s:9:"Lreu_1661";i:14;s:6:"Operon";i:15;s:6:"316266";i:16;s:29:"Lreu_1661;Lreu_1662;Lreu_1663";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009513.1";i:2;s:32:"Lactobacillus reuteri DSM 20016 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1880896-1880994";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1881098-1882427";i:10;s:1:"+";i:11;s:9:"Lreu_1828";i:12;s:24:"Uracil-xanthine permease";i:13;s:9:"Lreu_1828";i:14;s:11:"Single gene";i:15;s:7:"2060770";i:16;s:9:"Lreu_1828";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009513.1";i:2;s:32:"Lactobacillus reuteri DSM 20016 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1943848-1943946";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1944000-1944561";i:10;s:1:"+";i:11;s:9:"Lreu_1884";i:12;s:0:"";i:13;s:9:"Lreu_1884";i:14;s:11:"Single gene";i:15;s:7:"2060808";i:16;s:9:"Lreu_1884";i:17;s:0:"";i:18;s:15:"View Structure ";}}
