Genome: Clostridium botulinum A str. ATCC 3502 (NC_009495.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 200595-200696 (+)SAM202141-204376 (+)CBO0169

ATP-dependent RecD-like DNA helicase (2)		CBO0169Operon

DOOR ID: 312324		CBO0169,
CBO0170,
CBO0171		 View Structure
2 240907-241072 (+)ykoK242770-243466 (+)sleB

Spore cortex-lytic enzyme		CBO0204Single gene

DOOR ID: 2053138		CBO0204 (sleB) View Structure
3 297270-297445 (+)lysine299582-300317 (+)CBO0251

Putative metallo-beta-lactamase superfamily protein		CBO0251Single gene

DOOR ID: 2053168		CBO0251 View Structure
4 369858-369959 (+)purine371459-372032 (+)xpt

Xanthine phosphoribosyltransferase 1 (XPRTase 1) (2)		CBO0317Operon

DOOR ID: 312348		CBO0316 (pbuX),
CBO0317 (xpt)		 View Structure
5 502671-502845 (+)lysine504798-505014 (-)CBO0422

Putative membrane protein		CBO0422Single gene

DOOR ID: 2053249		CBO0422 View Structure
6 540140-540243 (-)TPP538011-538803 (-)thiK

Hydroxyethylthiazole kinase 1 (0) (4-methyl-5-beta-hydroxyethylthiazole kinase 1) (TH kinase 1) (Thz kinase 1)		CBO0450Operon

DOOR ID: 312372		CBO0449 (thiE),
CBO0450 (thiK)		 View Structure
7 654588-654693 (+)TPP655564-655765 (-)CBO0557

Putative membrane protein		CBO0557Single gene

DOOR ID: 2053327		CBO0557 View Structure
8 892229-892329 (+)THF892424-893204 (+)CBO0790

Putative membrane protein		CBO0790Single gene

DOOR ID: 2053449		CBO0790 View Structure
9 1019552-1019733 (+)cobalamin1019875-1021357 (+)cbiP

Cobyric acid synthase		CBO0914Operon

DOOR ID: 312448		CBO0914 (cbiP),
CBO0915 (cobD)		 View Structure
10 1193313-1193415 (+)SAM1194477-1195119 (+)metI1

Putative D-methionine ABC transporter; permease protein		CBO1085Operon

DOOR ID: 312483		CBO1084 (metN1),
CBO1085 (metI1),
CBO1086 (metQ1)		 View Structure
11 1371606-1371675 (+)glycine1371765-1372143 (+)grdX

Putative component of glycine reductase complex		CBO1255Single gene

DOOR ID: 2053703		CBO1255 (grdX) View Structure
12 1445639-1445762 (-)ydaO-yuaA1444138-1444513 (-)CBO1323

GntR-family transcriptional regulator		CBO1323Operon

DOOR ID: 312521		CBO1322,
CBO1323		 View Structure
13 1757803-1757906 (+)SAM1759079-1759769 (+)CBO1622

CBO1622Operon

DOOR ID: 312571		CBO1622,
CBO1623 (metH)		 View Structure
14 1975313-1975371 (-)fluoride1974068-1975256 (-)CBO1850

Na(+)/H(+) antiporter		CBO1850Single gene

DOOR ID: 2053987		CBO1850 View Structure
15 2004495-2004600 (-)SAM2001823-2003050 (-)hom

Homoserine dehydrogenase 		CBO1875Operon

DOOR ID: 312611		CBO1874 (metA),
CBO1875 (hom),
CBO1876 (cysD)		 View Structure
16 2144235-2144336 (-)purine2143103-2144168 (-)CBO2006

Putative membrane protein		CBO2006Operon

DOOR ID: 312641		CBO2005,
CBO2006		 View Structure
17 2338151-2338250 (-)purine2335122-2336475 (-)CBO2188

Amidohydrolase family protein		CBO2188Single gene

DOOR ID: 2054125		CBO2188 View Structure
18 2412818-2412924 (-)TPP2411945-2412515 (-)CBO2254

Putative membrane protein		CBO2254Operon

DOOR ID: 312685		CBO2253,
CBO2254		 View Structure
19 3001860-3001965 (-)ykkC-yxkD3001343-3001781 (-)CBO2829

Putative hydrolase		CBO2829Single gene

DOOR ID: 2054358		CBO2829 View Structure
20 3048095-3048213 (-)FMN3046106-3046757 (-)ribB

Riboflavin synthase alpha chain 		CBO2865Operon

DOOR ID: 312801		CBO2865 (ribB),
CBO2866 (ribD)		 View Structure
21 3054236-3054397 (-)ykoK3054047-3054167 (-)CBO2870

CBO2870Single gene

DOOR ID: 2054383		CBO2870 View Structure
22 3063061-3063162 (-)purine3061786-3062491 (-)purC

Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase)		CBO2877Operon

DOOR ID: 312802		CBO2874 (purN),
CBO2875 (purG),
CBO2876 (purF),
CBO2877 (purC),
CBO2878 (purE)		 View Structure
23 3090529-3090628 (-)purine3087969-3088563 (-)CBO2900

Putative exported protein		CBO2900Single gene

DOOR ID: 2054391		CBO2900 View Structure
24 3092802-3092891 (-)glycine3091032-3092385 (-)CBO2902

Putative sodium/amino acid (Alanine) symporter		CBO2902Single gene

DOOR ID: 2054393		CBO2902 View Structure
25 3105191-3105290 (-)TPP3102193-3103507 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CBO2911Operon

DOOR ID: 312807		CBO2910,
CBO2911 (thiC)		 View Structure
26 3109850-3109963 (+)FMN3111144-3111888 (-)CBO2922

Iron-sulfur cluster protein		CBO2922Single gene

DOOR ID: 2054402		CBO2922 View Structure
27 3416891-3416950 (-)fluoride3416470-3416623 (-)CBO3207

CBO3207Operon

DOOR ID: 312867		CBO3206,
CBO3207		 View Structure
28 3426648-3426738 (-)ZMP-ZTP3424101-3426330 (-)pflA

Formate acetyltransferase (4)		CBO3216Single gene

DOOR ID: 2054508		CBO3216 (pflA) View Structure
29 3506868-3506965 (-)purine3503781-3505314 (-)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		CBO3295Operon

DOOR ID: 312884		CBO3295 (guaA),
CBO3296 (guaB)		 View Structure
30 3564096-3564264 (-)lysine3562730-3563933 (-)lysC

Aspartokinase 		CBO3337Operon

DOOR ID: 312890		CBO3336 (lysA),
CBO3337 (lysC)		 View Structure
31 3643987-3644097 (-)SAM3641768-3642131 (-)CBO3401

CBO3401Single gene

DOOR ID: 2054591		CBO3401 View Structure
32 3672551-3672677 (+)ydaO-yuaA3673600-3674464 (-)trxB3

Thioredoxin reductase 		CBO3433Operon

DOOR ID: 312911		 View Structure