Genome: Geobacter uraniireducens Rf4 (NC_009483.1); Phylum: delta/epsilon subdivisions
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 247508-247587 (+)c-di-GMP-I247775-248738 (+)Gura_0186

Uncharacterized protein		Gura_0186single gene

DOOR ID: 2043822		Gura_0186 View Structure
2 323123-323198 (+)c-di-GMP-I323547-323763 (+)Gura_0262

Uncharacterized protein		Gura_0262single gene

DOOR ID: 2043855		Gura_0262 View Structure
3 458116-458192 (-)c-di-GMP-I457428-458037 (-)Gura_0384

Uncharacterized protein		Gura_0384single gene

DOOR ID: 2043922		Gura_0384 View Structure
4 463498-463577 (-)c-di-GMP-I462247-463483 (-)Gura_0389

Uncharacterized protein		Gura_0389single gene

DOOR ID: 2043927		Gura_0389 View Structure
5 626315-626391 (-)c-di-GMP-I625516-626065 (-)Gura_0534

Uncharacterized protein		Gura_0534single gene

DOOR ID: 2043985		Gura_0534 View Structure
6 626519-626595 (-)c-di-GMP-I625516-626065 (-)Gura_0534

Uncharacterized protein		Gura_0534single gene

DOOR ID: 2043985		Gura_0534 View Structure
7 703194-703295 (-)SAM701988-703101 (-)Gura_0583

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Gura_0583Operon

DOOR ID: 307764		Gura_0582,
Gura_0583		 View Structure
8 838444-838520 (+)c-di-GMP-I838932-840594 (+)Gura_0706

Uncharacterized protein		Gura_0706single gene

DOOR ID: 2044050		Gura_0706 View Structure
9 838672-838748 (+)c-di-GMP-I838932-840594 (+)Gura_0706

Uncharacterized protein		Gura_0706single gene

DOOR ID: 2044050		Gura_0706 View Structure
10 931436-931633 (-)cobalamin929196-931425 (-)Gura_0778

TonB-dependent receptor		Gura_0778Operon

DOOR ID: 307807		Gura_0773,
Gura_0774,
Gura_0775,
Gura_0776,
Gura_0777,
Gura_0778		 View Structure
11 931705-931897 (-)cobalamin929196-931425 (-)Gura_0778

TonB-dependent receptor		Gura_0778Operon

DOOR ID: 307807		Gura_0773,
Gura_0774,
Gura_0775,
Gura_0776,
Gura_0777,
Gura_0778		 View Structure
12 1054413-1054497 (-)SAH1052588-1054112 (-)Gura_0888

NADH-ubiquinone oxidoreductase; chain 49kDa		Gura_0888Operon

DOOR ID: 307825		Gura_0888,
Gura_0889,
Gura_0890,
Gura_0891,
Gura_0892,
Gura_0893		 View Structure
13 2005205-2005281 (-)c-di-GMP-I2004281-2005127 (-)Gura_1727

Uncharacterized protein		Gura_1727single gene

DOOR ID: 2044493		Gura_1727 View Structure
14 2025022-2025185 (-)c-di-GMP-I2024273-2024969 (-)Gura_1742

Uncharacterized protein		Gura_1742operon

DOOR ID: 307999		Gura_1741,
Gura_1742		 View Structure
15 2035430-2035506 (-)c-di-GMP-I2034431-2035346 (-)Gura_1754

Uncharacterized protein		Gura_1754single gene

DOOR ID: 2044502		Gura_1754 View Structure
16 2097368-2097444 (+)c-di-GMP-I2097602-2097803 (+)Gura_1809

Transcriptional regulator; XRE family		Gura_1809single gene

DOOR ID: 2044523		Gura_1809 View Structure
17 2356611-2356687 (+)c-di-GMP-I2357087-2359139 (+)Gura_2022

Fibronectin; type III domain protein		Gura_2022single gene

DOOR ID: 2044587		Gura_2022 View Structure
18 2356837-2356914 (+)c-di-GMP-I2357087-2359139 (+)Gura_2022

Fibronectin; type III domain protein		Gura_2022single gene

DOOR ID: 2044587		Gura_2022 View Structure
19 2388777-2388949 (-)ykoK2387445-2388726 (-)Gura_2041

MgtE intracellular region		Gura_2041Operon

DOOR ID: 308064		Gura_2040,
Gura_2041		 View Structure
20 2518824-2518900 (-)c-di-GMP-I2517301-2518621 (-)Gura_2161

ErfK/YbiS/YcfS/YnhG family protein		Gura_2161single gene

DOOR ID: 2044634		Gura_2161 View Structure
21 2519009-2519084 (-)c-di-GMP-I2517301-2518621 (-)Gura_2161

ErfK/YbiS/YcfS/YnhG family protein		Gura_2161single gene

DOOR ID: 2044634		Gura_2161 View Structure
22 2691962-2692038 (-)c-di-GMP-I2690398-2691847 (-)Gura_2327

Fibronectin; type III domain protein		Gura_2327single gene

DOOR ID: 2044691		Gura_2327 View Structure
23 2694495-2694571 (-)c-di-GMP-I2692359-2694387 (-)Gura_2328

Fibronectin; type III domain protein		Gura_2328single gene

DOOR ID: 2044692		Gura_2328 View Structure
24 2697411-2697487 (+)c-di-GMP-I2697623-2698574 (+)Gura_2331

Uncharacterized protein		Gura_2331single gene

DOOR ID: 2044693		Gura_2331 View Structure
25 2785587-2785665 (+)c-di-GMP-I2785855-2786011 (+)Gura_2402

Uncharacterized protein		Gura_2402single gene

DOOR ID: 2044713		Gura_2402 View Structure
26 2790512-2790589 (-)c-di-GMP-I2789683-2790301 (-)Gura_2408

OmpW family protein		Gura_2408single gene

DOOR ID: 2044716		Gura_2408 View Structure
27 2804099-2804217 (+)MOCO2804248-2805979 (+)Gura_2421

Aldehyde ferredoxin oxidoreductase 		Gura_2421Single gene

DOOR ID: 2044721		Gura_2421 View Structure
28 2843059-2843136 (-)c-di-GMP-I2841640-2842906 (-)Gura_2459

Beta-lactamase domain protein		Gura_2459single gene

DOOR ID: 2044736		Gura_2459 View Structure
29 2885709-2885785 (-)c-di-GMP-I2885065-2885632 (-)Gura_2496

Uncharacterized protein		Gura_2496single gene

DOOR ID: 2044750		Gura_2496 View Structure
30 2980387-2980463 (+)c-di-GMP-I2980543-2981335 (+)Gura_2577

Uncharacterized protein		Gura_2577single gene

DOOR ID: 2044782		Gura_2577 View Structure
31 3544154-3544233 (+)c-di-GMP-I3544332-3546135 (+)Gura_3046

Peptidylprolyl isomerase 		Gura_3046single gene

DOOR ID: 2044944		Gura_3046 View Structure
32 3600510-3600589 (-)c-di-GMP-I3591831-3600393 (-)Gura_3080

Conserved repeat domain protein		Gura_3080single gene

DOOR ID: 2044959		Gura_3080 View Structure
33 3601051-3601129 (-)c-di-GMP-I3600777-3601047 (-)Gura_3081

Uncharacterized protein		Gura_3081single gene

DOOR ID: 2044960		Gura_3081 View Structure
34 3601294-3601373 (-)c-di-GMP-I3600777-3601047 (-)Gura_3081

Uncharacterized protein		Gura_3081single gene

DOOR ID: 2044960		Gura_3081 View Structure
35 3898438-3898514 (+)c-di-GMP-I3898609-3900688 (+)Gura_3316

Peptidase S8 and S53; subtilisin; kexin; sedolisin		Gura_3316single gene

DOOR ID: 2045035		Gura_3316 View Structure
36 4152305-4152425 (-)MOCO4151814-4152108 (-)Gura_3535

Gura_3535Operon

DOOR ID: 308386		Gura_3535,
Gura_3536		 View Structure
37 4162192-4162310 (-)MOCO4161717-4162101 (-)Gura_3545

Molybdopterin biosynthesis MoaE protein		Gura_3545Single gene

DOOR ID: 2045143		Gura_3545 View Structure
38 4166416-4166533 (-)MOCO4164642-4166379 (-)Gura_3550

Aldehyde ferredoxin oxidoreductase 		Gura_3550Single gene

DOOR ID: 2045145		Gura_3550 View Structure
39 4286617-4286720 (+)TPP4286794-4286998 (+)Gura_3658

Thiamine biosynthesis protein ThiS		Gura_3658Operon

DOOR ID: 308417		Gura_3658,
Gura_3659 (thiG),
Gura_3660,
Gura_3661		 View Structure
40 4499674-4499775 (+)TPP4499862-4501356 (+)Gura_3851

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		Gura_3851Operon

DOOR ID: 308465		Gura_3851,
Gura_3852		 View Structure
41 4509813-4509918 (-)SAM4508613-4509759 (-)Gura_3858

Cystathionine gamma-synthase / cysteine synthase (8)		Gura_3858Operon

DOOR ID: 308468		Gura_3857,
Gura_3858		 View Structure
42 4591570-4591678 (-)SAM4590240-4591527 (-)Gura_3945

O-acetylhomoserine sulfhydrolase (9)		Gura_3945Operon

DOOR ID: 308488		Gura_3943,
Gura_3944,
Gura_3945		 View Structure
43 4843988-4844174 (-)cobalamin4843113-4843869 (-)Gura_4182

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Gura_4182Operon

DOOR ID: 308528		Gura_4180,
Gura_4181,
Gura_4182		 View Structure
44 4850264-4850452 (-)cobalamin4849656-4850178 (-)Gura_4188

Bifunctional adenosylcobalamin biosynthesis protein (2)		Gura_4188Operon

DOOR ID: 308529		Gura_4183,
Gura_4184,
Gura_4185,
Gura_4186,
Gura_4187 (cobT),
Gura_4188		 View Structure