Genome: Pseudomonas mendocina ymp (NC_009439.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 478877-478968 (-)SAH477444-478854 (-)Pmen_0449

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		Pmen_0449Operon

DOOR ID: 298314		Pmen_0447,
Pmen_0448,
Pmen_0449		 View Structure
2 672195-672301 (-)TPP670216-672100 (-)Pmen_0609

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Pmen_0609Operon

DOOR ID: 298350		Pmen_0607,
Pmen_0608,
Pmen_0609		 View Structure
3 1523024-1523071 (-)mini-ykkC1519303-1522999 (-)Pmen_1358

Pmen_1358Operon

DOOR ID: 298505		Pmen_1355,
Pmen_1356,
Pmen_1357,
Pmen_1358		 View Structure
4 1525756-1525855 (-)ykkC-yxkD1524620-1525688 (-)Pmen_1361

ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein		Pmen_1361Operon

DOOR ID: 298506		Pmen_1359,
Pmen_1360,
Pmen_1361		 View Structure
5 1530174-1530274 (-)ykkC-yxkD1529172-1529988 (-)Pmen_1365

Binding-protein-dependent transport systems inner membrane component		Pmen_1365Operon

DOOR ID: 298508		Pmen_1364,
Pmen_1365		 View Structure
6 1531564-1531681 (-)ykkC-yxkD1530448-1531510 (-)Pmen_1366

ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein		Pmen_1366Single gene

DOOR ID: 2026516		Pmen_1366 View Structure
7 1925111-1925322 (+)cobalamin1925505-1926117 (+)Pmen_1750

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		Pmen_1750Operon

DOOR ID: 298589		Pmen_1750,
Pmen_1751,
Pmen_1752,
Pmen_1753 (cobD),
Pmen_1754,
Pmen_1755,
Pmen_1756 (cobU),
Pmen_1757 (cobT),
Pmen_1758,
Pmen_1759 (cobS)		 View Structure
8 2929651-2929738 (-)SAH2928919-2929486 (+)Pmen_2669

Transcriptional regulator; AraC family		Pmen_2669Single gene

DOOR ID: 2027000		Pmen_2669 View Structure
9 4051729-4051861 (+)yybP-ykoY4051936-4052521 (+)Pmen_3666

Pmen_3666Single gene

DOOR ID: 2027391		Pmen_3666 View Structure
10 4136223-4136427 (-)cobalamin4135486-4136170 (-)Pmen_3752

Pmen_3752Single gene

DOOR ID: 2027441		Pmen_3752 View Structure
11 4236318-4236520 (+)cobalamin4236608-4238495 (+)Pmen_3845

TonB-dependent receptor; plug		Pmen_3845Single gene

DOOR ID: 2027462		Pmen_3845 View Structure
12 4246505-4246659 (-)FMN4245715-4246378 (-)Pmen_3856

Riboflavin synthase; alpha subunit		Pmen_3856Operon

DOOR ID: 299016		Pmen_3855,
Pmen_3856		 View Structure
13 5012489-5012683 (-)cobalamin5010049-5012290 (-)Pmen_4567

TonB-dependent siderophore receptor		Pmen_4567Operon

DOOR ID: 299172		Pmen_4564,
Pmen_4565,
Pmen_4566,
Pmen_4567		 View Structure
14 5015759-5015943 (+)cobalamin5015943-5017353 (+)Pmen_4571

Precorrin-3B synthase		Pmen_4571Operon

DOOR ID: 299174		Pmen_4571,
Pmen_4572 (cobH),
Pmen_4573		 View Structure
15 5036935-5037130 (-)cobalamin5035790-5036840 (-)Pmen_4587

Cobalamin biosynthesis protein CobW		Pmen_4587Operon

DOOR ID: 299178		Pmen_4586 (cobN),
Pmen_4587		 View Structure