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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
242143-242251
(-)
TPP
240169-242062 (-)
Ent638_0207
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ent638_0207
Operon
DOOR ID:
296195
Ent638_0202
(thiH)
,
Ent638_0203
(thiG)
,
Ent638_0204,
Ent638_0205,
Ent638_0206,
Ent638_0207
View Structure
2
386379-386423
(+)
mini-ykkC
386452-386770 (+)
Ent638_0337
Ent638_0337
Single gene
DOOR ID:
2021924
Ent638_0337
View Structure
3
495640-495750
(+)
Mg sensor
495849-498558 (+)
Ent638_0441
Magnesium-translocating P-type ATPase
Ent638_0441
Single gene
DOOR ID:
2021970
Ent638_0441
View Structure
4
696277-696377
(-)
TPP
695261-696245 (-)
tbpA
Thiamine ABC transporter; periplasmic binding protein
Ent638_0615
Operon
DOOR ID:
296272
Ent638_0613
(thiQ)
,
Ent638_0614
(thiP)
,
Ent638_0615
(tbpA)
View Structure
5
1402015-1402149
(+)
MOCO
1403148-1403661 (+)
Ent638_1274
Molybdenum cofactor biosynthesis protein B
Ent638_1274
Operon
DOOR ID:
296408
Ent638_1273
(moaA)
,
Ent638_1274,
Ent638_1275
(moaC)
,
Ent638_1276
(moaD)
,
Ent638_1277
(moaE)
,
Ent638_1278
View Structure
6
2580931-2581126
(+)
yybP-ykoY
2581648-2582509 (-)
rrmA
23S rRNA m(1)G-745 methyltransferase
Ent638_2391
Operon
DOOR ID:
296595
Ent638_2391
(rrmA)
,
Ent638_2392
View Structure
7
2926294-2926390
(-)
TPP
2925487-2926258 (-)
Ent638_2711
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Ent638_2711
Operon
DOOR ID:
296650
Ent638_2710,
Ent638_2711
View Structure
8
3761277-3761427
(-)
FMN
3760517-3761171 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Ent638_3453
Single gene
DOOR ID:
2023175
Ent638_3453
(ribB)
View Structure
9
4368756-4368932
(-)
cobalamin
4366842-4368690 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Ent638_4020
Operon
DOOR ID:
296917
Ent638_4019,
Ent638_4020
(btuB)
View Structure
Genome:
Enterobacter sp. 638
(
NC_009436.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"386379-386423";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"386452-386770";i:10;s:1:"+";i:11;s:11:"Ent638_0337";i:12;s:0:"";i:13;s:11:"Ent638_0337";i:14;s:11:"Single gene";i:15;s:7:"2021924";i:16;s:11:"Ent638_0337";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"495640-495750";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:13:"495849-498558";i:10;s:1:"+";i:11;s:11:"Ent638_0441";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:11:"Ent638_0441";i:14;s:11:"Single gene";i:15;s:7:"2021970";i:16;s:11:"Ent638_0441";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"696277-696377";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"695261-696245";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:11:"Ent638_0615";i:14;s:6:"Operon";i:15;s:6:"296272";i:16;s:53:"Ent638_0613(thiQ);Ent638_0614(thiP);Ent638_0615(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1402015-1402149";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1403148-1403661";i:10;s:1:"+";i:11;s:11:"Ent638_1274";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:11:"Ent638_1274";i:14;s:6:"Operon";i:15;s:6:"296408";i:16;s:95:"Ent638_1273(moaA);Ent638_1274;Ent638_1275(moaC);Ent638_1276(moaD);Ent638_1277(moaE);Ent638_1278";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2580931-2581126";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2581648-2582509";i:10;s:1:"-";i:11;s:4:"rrmA";i:12;s:36:"23S rRNA m(1)G-745 methyltransferase";i:13;s:11:"Ent638_2391";i:14;s:6:"Operon";i:15;s:6:"296595";i:16;s:29:"Ent638_2391(rrmA);Ent638_2392";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2926294-2926390";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2925487-2926258";i:10;s:1:"-";i:11;s:11:"Ent638_2711";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:11:"Ent638_2711";i:14;s:6:"Operon";i:15;s:6:"296650";i:16;s:23:"Ent638_2710;Ent638_2711";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3761277-3761427";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3760517-3761171";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"Ent638_3453";i:14;s:11:"Single gene";i:15;s:7:"2023175";i:16;s:17:"Ent638_3453(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009436.1";i:2;s:20:"Enterobacter sp. 638";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4368756-4368932";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4366842-4368690";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:11:"Ent638_4020";i:14;s:6:"Operon";i:15;s:6:"296917";i:16;s:29:"Ent638_4019;Ent638_4020(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
