Genome: Paracoccus denitrificans PD1222 chromosome I (NC_008686.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 34800-34903 (-)TPP33904-34759 (-)Pden_0042

Hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase
Pden_0042Operon

DOOR ID: 247443
Pden_0033,
Pden_0034,
Pden_0035,
Pden_0036,
Pden_0037,
Pden_0038 (thiE),
Pden_0039 (thiG),
Pden_0040,
Pden_0041,
Pden_0042
View Structure
2 167279-167373 (-)glycine165931-167233 (-)Pden_0183

D-amino acid dehydrogenase small subunit
Pden_0183Single gene

DOOR ID: 1926426
Pden_0183 View Structure
3 1319736-1319936 (+)cobalamin1320062-1321046 (+)Pden_1354

Pden_1354Single gene

DOOR ID: 1926766
Pden_1354 View Structure
4 1328204-1328400 (-)cobalamin1327100-1328108 (-)Pden_1362

Periplasmic binding protein
Pden_1362Operon

DOOR ID: 247716
Pden_1358,
Pden_1359,
Pden_1360,
Pden_1361,
Pden_1362
View Structure
5 1337356-1337566 (-)cobalamin1335336-1337220 (-)Pden_1368

TonB-dependent receptor
Pden_1368Operon

DOOR ID: 247718
Pden_1366,
Pden_1367,
Pden_1368
View Structure
6 1747393-1747494 (+)ykkC-yxkD1747541-1748414 (+)Pden_1761

Pden_1761Single gene

DOOR ID: 1926903
Pden_1761 View Structure
7 1874599-1874647 (+)SAM-SAH1874652-1875819 (+)Pden_1873

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Pden_1873Single gene

DOOR ID: 1926941
Pden_1873 View Structure
8 2346516-2346604 (-)glycine2345269-2346382 (-)Pden_2348

Glycine cleavage system T protein
Pden_2348Operon

DOOR ID: 247926
Pden_2347,
Pden_2348
View Structure
9 2539767-2539972 (+)cobalamin2540008-2540185 (+)Pden_2524

Pden_2524Operon

DOOR ID: 247963
Pden_2524,
Pden_2525
View Structure
10 2543185-2543386 (+)cobalamin2543462-2543816 (+)Pden_2530

Pden_2530Operon

DOOR ID: 247966
Pden_2530,
Pden_2531,
Pden_2532 (cobN),
Pden_2533,
Pden_2534 (cobH),
Pden_2535,
Pden_2536
View Structure