Genome: Pelobacter propionicus DSM 2379 (NC_008609.1); Phylum: delta/epsilon subdivisions
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 306485-306561 (+)c-di-GMP-I306879-308067 (+)Ppro_0309

Uncharacterized protein		Ppro_0309single gene

DOOR ID: 1921124		Ppro_0309 View Structure
2 311269-311418 (+)FMN311534-312239 (+)Ppro_0312

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		Ppro_0312Operon

DOOR ID: 245636		Ppro_0312,
Ppro_0313		 View Structure
3 315321-315395 (-)c-di-GMP-I313921-314884 (-)Ppro_0316

Metal dependent phosphohydrolase		Ppro_0316single gene

DOOR ID: 1921127		Ppro_0316 View Structure
4 609393-609469 (-)c-di-GMP-I607981-609307 (-)Ppro_0573

ErfK/YbiS/YcfS/YnhG family protein		Ppro_0573single gene

DOOR ID: 1921210		Ppro_0573 View Structure
5 609613-609688 (-)c-di-GMP-I607981-609307 (-)Ppro_0573

ErfK/YbiS/YcfS/YnhG family protein		Ppro_0573single gene

DOOR ID: 1921210		Ppro_0573 View Structure
6 620978-621093 (-)MOCO619216-620950 (-)Ppro_0580

Aldehyde ferredoxin oxidoreductase 		Ppro_0580Single gene

DOOR ID: 1921215		Ppro_0580 View Structure
7 647957-648111 (-)ydaO-yuaA646011-647829 (-)Ppro_0610

Probable potassium transport system protein kup		Ppro_0610Single gene

DOOR ID: 1921223		Ppro_0610 View Structure
8 935247-935365 (+)MOCO935396-937127 (+)Ppro_0888

Aldehyde ferredoxin oxidoreductase 		Ppro_0888Single gene

DOOR ID: 1921309		Ppro_0888 View Structure
9 1047089-1047165 (+)c-di-GMP-I1047234-1047438 (+)Ppro_1000

Helicase; putative		Ppro_1000single gene

DOOR ID: 1921343		Ppro_1000 View Structure
10 1207951-1208117 (-)ykoK1206620-1207883 (-)Ppro_1158

MgtE intracellular region		Ppro_1158Operon

DOOR ID: 245815		Ppro_1157,
Ppro_1158		 View Structure
11 1280737-1280913 (-)cobalamin1279922-1280603 (-)Ppro_1226

Cobalt transport protein CbiM 1 (Energy-coupling factor transporter probable substrate-capture protein CbiM 1) (ECF transporter S component CbiM 1)		Ppro_1226Operon

DOOR ID: 245829		Ppro_1223,
Ppro_1224,
Ppro_1225,
Ppro_1226		 View Structure
12 1287242-1287556 (-)cobalamin1285186-1287223 (-)Ppro_1231

TonB-dependent receptor		Ppro_1231Single gene

DOOR ID: 1921441		Ppro_1231 View Structure
13 1298027-1298216 (-)cobalamin1297193-1297865 (-)Ppro_1239

Cell division and transport-associated protein TolQ		Ppro_1239Operon

DOOR ID: 245833		Ppro_1236,
Ppro_1237,
Ppro_1238,
Ppro_1239		 View Structure
14 1300303-1300492 (-)cobalamin1299286-1300147 (-)Ppro_1242

Ppro_1242Operon

DOOR ID: 245834		Ppro_1240,
Ppro_1241,
Ppro_1242		 View Structure
15 1312853-1313047 (+)cobalamin1313484-1314258 (+)Ppro_1254

Cytochrome c assembly protein		Ppro_1254Operon

DOOR ID: 245837		Ppro_1254,
Ppro_1255		 View Structure
16 1330258-1330573 (+)cobalamin1330594-1332634 (+)Ppro_1266

TonB-dependent receptor		Ppro_1266Operon

DOOR ID: 245840		Ppro_1266,
Ppro_1267		 View Structure
17 1351088-1351280 (-)cobalamin1347960-1350144 (-)Ppro_1285

Methylmalonyl-CoA mutase 		Ppro_1285Operon

DOOR ID: 245845		Ppro_1282,
Ppro_1283,
Ppro_1284,
Ppro_1285		 View Structure
18 1969830-1969935 (+)SAM1970001-1971153 (+)Ppro_1830

Cysteine synthase / cystathionine gamma-synthase (8)		Ppro_1830Operon

DOOR ID: 245954		Ppro_1830,
Ppro_1831		 View Structure
19 2353262-2353340 (+)c-di-GMP-I2353428-2354742 (+)Ppro_2181

Uncharacterized protein		Ppro_2181operon

DOOR ID: 246025		Ppro_2181,
Ppro_2182		 View Structure
20 2368974-2369055 (+)c-di-GMP-I2369361-2370888 (+)Ppro_2199

Uncharacterized protein		Ppro_2199operon

DOOR ID: 246028		Ppro_2198,
Ppro_2199		 View Structure
21 2448396-2448471 (-)c-di-GMP-I2447401-2448196 (-)Ppro_2270

Uncharacterized protein		Ppro_2270operon

DOOR ID: 246040		Ppro_2269,
Ppro_2270		 View Structure
22 2576288-2576366 (-)c-di-GMP-I2575540-2575882 (-)Ppro_2372

Uncharacterized protein		Ppro_2372single gene

DOOR ID: 1921868		Ppro_2372 View Structure
23 2645467-2645554 (-)c-di-GMP-I2643891-2645391 (-)Ppro_2445

Fibronectin; type III domain protein		Ppro_2445single gene

DOOR ID: 1921895		Ppro_2445 View Structure
24 2712839-2712914 (+)c-di-GMP-I2713009-2713264 (+)Ppro_2505

Lipoprotein; putative		Ppro_2505single gene

DOOR ID: 1921920		Ppro_2505 View Structure
25 2787031-2787107 (+)c-di-GMP-I2787273-2788755 (+)Ppro_2572

Uncharacterized protein		Ppro_2572single gene

DOOR ID: 1921948		Ppro_2572 View Structure
26 2816824-2816928 (+)TPP2817005-2818490 (+)Ppro_2595

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		Ppro_2595Single gene

DOOR ID: 1921967		Ppro_2595 View Structure
27 3069956-3070148 (+)cobalamin3070264-3070798 (+)Ppro_2805

Bifunctional adenosylcobalamin biosynthesis protein (2)		Ppro_2805Operon

DOOR ID: 246145		Ppro_2805,
Ppro_2806 (cobT),
Ppro_2807,
Ppro_2808		 View Structure
28 3117927-3118003 (+)c-di-GMP-I3119501-3121124 (+)Ppro_2850

Uncharacterized protein		Ppro_2850single gene

DOOR ID: 1922073		Ppro_2850 View Structure
29 3118185-3118275 (+)c-di-GMP-I3119501-3121124 (+)Ppro_2850

Uncharacterized protein		Ppro_2850single gene

DOOR ID: 1922073		Ppro_2850 View Structure
30 3251809-3251882 (-)c-di-GMP-I3251359-3251689 (-)Ppro_2981

Uncharacterized protein		Ppro_2981single gene

DOOR ID: 1922118		Ppro_2981 View Structure
31 3445254-3445331 (+)c-di-GMP-I3445513-3446896 (+)Ppro_3141

Uncharacterized protein		Ppro_3141single gene

DOOR ID: 1922168		Ppro_3141 View Structure
32 3837723-3837825 (+)TPP3837869-3838070 (+)Ppro_3474

Sulfur carrier protein ThiS		Ppro_3474Single gene

DOOR ID: 1922263		Ppro_3474 View Structure
33 3869878-3869976 (-)SAM3868704-3869820 (-)Ppro_3500

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Ppro_3500Operon

DOOR ID: 246305		Ppro_3499,
Ppro_3500		 View Structure