Genome: Clostridium novyi NT (NC_008593.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 271835-272131 (+)glmS272183-274010 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		NT01CX_1166Single gene

DOOR ID: 1913342		NT01CX_1166 (glmS) View Structure
2 316300-316411 (+)SAM316503-317781 (+)NT01CX_1210

O-acetylhomoserine/O-acetylserine sulfhydrylase		NT01CX_1210Operon

DOOR ID: 240950		NT01CX_1210,
NT01CX_1211 (metA)		 View Structure
3 467376-467583 (+)cobalamin467725-468472 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		NT01CX_1329Operon

DOOR ID: 240981		NT01CX_1329 (cbiM),
NT01CX_1330 (cbiN),
NT01CX_1331 (cbiQ)		 View Structure
4 492684-492857 (+)lysine493003-494302 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		NT01CX_1352Single gene

DOOR ID: 1913000		NT01CX_1352 (lysA) View Structure
5 599955-600062 (+)TPP600272-600860 (+)NT01CX_1441

Probable proton-coupled thiamine transporter YuaJ		NT01CX_1441Single gene

DOOR ID: 1912986		NT01CX_1441 View Structure
6 667242-667370 (-)ydaO-yuaA666411-667236 (-)NT01CX_1494

LysM-repeat proteins and domains		NT01CX_1494Single gene

DOOR ID: 1912996		NT01CX_1494 View Structure
7 1272358-1272535 (+)cobalamin1272656-1273724 (+)cobT

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		NT01CX_2077Operon

DOOR ID: 241112		NT01CX_2077 (cobT),
NT01CX_2078,
NT01CX_2079 (cobS),
NT01CX_2080,
NT01CX_2081 (cobQ),
NT01CX_2082 (cobD),
NT01CX_2083,
NT01CX_2084,
NT01CX_2085,
NT01CX_2086		 View Structure
8 1443123-1443221 (-)purine1441685-1443053 (-)NT01CX_2252

Xanthine/uracil permease family protein		NT01CX_2252Single gene

DOOR ID: 1913481		NT01CX_2252 View Structure
9 1565499-1565673 (-)lysine1563906-1565334 (-)NT01CX_2354

Lysine-specific permease		NT01CX_2354Single gene

DOOR ID: 1913497		NT01CX_2354 View Structure
10 1592036-1592082 (+)PreQ11592191-1593190 (+)hgdB

Probable chain of benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase		NT01CX_2382Operon

DOOR ID: 241169		NT01CX_2382 (hgdB),
NT01CX_2383,
NT01CX_2384,
NT01CX_2385,
NT01CX_2386		 View Structure
11 1633995-1634096 (-)purine1632387-1633815 (-)NT01CX_2417

Guanine-hypoxanthine permease		NT01CX_2417Single gene

DOOR ID: 1913372		NT01CX_2417 View Structure
12 1646682-1646780 (-)glycine1645218-1646607 (-)NT01CX_2425

Sodium/alanine symporter family protein		NT01CX_2425Single gene

DOOR ID: 1912976		NT01CX_2425 View Structure
13 1647607-1647712 (-)THF1647024-1647543 (-)NT01CX_2426

Folate transporter FolT (Folate ECF transporter S component FolT)		NT01CX_2426Single gene

DOOR ID: 1913559		NT01CX_2426 View Structure
14 1748569-1748667 (+)TPP1748771-1750085 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		NT01CX_0092Single gene

DOOR ID: 1913622		NT01CX_0092 (thiC) View Structure
15 1785743-1785918 (-)lysine1783857-1785612 (-)NT01CX_0133

Na+/H+ antiporter family protein		NT01CX_0133Single gene

DOOR ID: 1913097		NT01CX_0133 View Structure
16 1839214-1839321 (-)SAM1838184-1839141 (-)NT01CX_0186

Methionine import ATP-binding protein MetN 		NT01CX_0186Operon

DOOR ID: 241214		NT01CX_0184,
NT01CX_0185,
NT01CX_0186		 View Structure
17 1871526-1871611 (-)c-di-GMP-I1870714-1871470 (-)NT01CX_0209

Transglutaminase-like enzyme; putative cysteine protease		NT01CX_0209single gene

DOOR ID: 1913653		NT01CX_0209 View Structure
18 1875172-1875256 (-)c-di-GMP-II1872367-1875046 (-)NT01CX_0211

Putative S-layer protein (Peptidoglycan anchored)		NT01CX_0211Single gene

DOOR ID: 1913655		NT01CX_0211 View Structure
19 1920853-1920955 (+)TPP1921128-1921932 (+)thiD

Phosphomethylpyrimidine kinase 		NT01CX_0246Operon

DOOR ID: 241224		NT01CX_0246 (thiD),
NT01CX_0247 (thiM),
NT01CX_0248 (thiE)		 View Structure
20 2096898-2096999 (-)purine2096172-2096745 (-)NT01CX_0402

Xanthine phosphoribosyltransferase (XPRTase) (2)		NT01CX_0402Operon

DOOR ID: 241252		NT01CX_0398 (rbsC),
NT01CX_0399 (rbsC),
NT01CX_0400 (rbsA),
NT01CX_0401,
NT01CX_0402		 View Structure
21 2143175-2143272 (-)purine2141575-2143030 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		NT01CX_0460Single gene

DOOR ID: 1913101		NT01CX_0460 (guaB) View Structure
22 2191265-2191386 (-)FMN2190516-2191158 (-)NT01CX_0505

Riboflavin transporter		NT01CX_0505Single gene

DOOR ID: 1913725		NT01CX_0505 View Structure
23 2205436-2205540 (-)SAM2204189-2205365 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		NT01CX_0516Single gene

DOOR ID: 1913729		NT01CX_0516 (metK) View Structure
24 2263491-2263667 (-)cobalamin2262011-2263367 (-)cobB

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)		NT01CX_0583Operon

DOOR ID: 241278		NT01CX_0573 (cbiK),
NT01CX_0574 (cobK),
NT01CX_0575 (cobJ),
NT01CX_0576 (cbiG),
NT01CX_0577 (cobM),
NT01CX_0578 (cobI),
NT01CX_0579 (cbiT),
NT01CX_0580 (cbiE),
NT01CX_0581 (cbiD),
NT01CX_0582 (cbiC),
NT01CX_0583 (cobB)		 View Structure
25 2406967-2407086 (-)FMN2405566-2406700 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		NT01CX_0715Operon

DOOR ID: 241304		NT01CX_0712 (ribH),
NT01CX_0713,
NT01CX_0714 (ribE),
NT01CX_0715 (ribD)		 View Structure