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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
92453-92631
(-)
lysine
91007-92354 (-)
LSEI_0098
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LSEI_0098
Operon
DOOR ID:
228158
LSEI_0096,
LSEI_0097,
LSEI_0098
View Structure
2
297234-297323
(+)
TPP
297479-298046 (+)
LSEI_0294
ABC-type cobalt transport system; permease component
LSEI_0294
Operon
DOOR ID:
228194
LSEI_0294,
LSEI_0295,
LSEI_0296
View Structure
3
851951-852039
(+)
SMK_box
853334-854828 (+)
LSEI_0878
Permease of the major facilitator superfamily
LSEI_0878
Single gene
DOOR ID:
1886755
LSEI_0878
View Structure
4
1361659-1361777
(+)
FMN
1361873-1362452 (+)
LSEI_1373
Riboflavin transporter
LSEI_1373
Single gene
DOOR ID:
1886943
LSEI_1373
View Structure
5
1752375-1752472
(-)
TPP
1751726-1752332 (-)
LSEI_1757
Thiamine transporter ThiT (Thiamine ECF transporter S component ThiT)
LSEI_1757
Single gene
DOOR ID:
1887045
LSEI_1757
View Structure
6
1838210-1838385
(-)
lysine
1836118-1837573 (-)
LSEI_1839
Lysine:proton symporter; AAT family
LSEI_1839
Single gene
DOOR ID:
1887086
LSEI_1839
View Structure
7
2043181-2043279
(-)
preQ1-II
2041748-2042402 (+)
LSEI_2055
Predicted acyltransferase
LSEI_2055
Single gene
DOOR ID:
1887181
LSEI_2055
View Structure
8
2247747-2247841
(-)
THF
2247191-2247710 (-)
LSEI_2252
Folate transporter FolT (Folate ECF transporter S component FolT)
LSEI_2252
Single gene
DOOR ID:
1887279
LSEI_2252
View Structure
9
2429817-2429871
(-)
fluoride
2429251-2429662 (-)
LSEI_2442
Putative fluoride ion transporter CrcB
LSEI_2442
Operon
DOOR ID:
228603
LSEI_2441,
LSEI_2442
View Structure
10
2430592-2430656
(+)
fluoride
2430714-2430801 (+)
LSEI_2444
LSEI_2444
Single gene
DOOR ID:
1887371
LSEI_2444
View Structure
11
2818786-2818958
(+)
lysine
2819070-2820669 (+)
LSEI_2837
Amino acid ABC transporter substrate-binding protein; PAAT family / amino acid ABC transporter membrane protein; PAAT family
LSEI_2837
Operon
DOOR ID:
228680
LSEI_2837,
LSEI_2838
View Structure
Genome:
Lactobacillus casei ATCC 334
(
NC_008526.1
);
Phylum:
Firmicutes
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"92453-92631";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:11:"91007-92354";i:10;s:1:"-";i:11;s:9:"LSEI_0098";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LSEI_0098";i:14;s:6:"Operon";i:15;s:6:"228158";i:16;s:29:"LSEI_0096;LSEI_0097;LSEI_0098";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"297234-297323";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"297479-298046";i:10;s:1:"+";i:11;s:9:"LSEI_0294";i:12;s:52:"ABC-type cobalt transport system; permease component";i:13;s:9:"LSEI_0294";i:14;s:6:"Operon";i:15;s:6:"228194";i:16;s:29:"LSEI_0294;LSEI_0295;LSEI_0296";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"851951-852039";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"853334-854828";i:10;s:1:"+";i:11;s:9:"LSEI_0878";i:12;s:45:"Permease of the major facilitator superfamily";i:13;s:9:"LSEI_0878";i:14;s:11:"Single gene";i:15;s:7:"1886755";i:16;s:9:"LSEI_0878";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1361659-1361777";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1361873-1362452";i:10;s:1:"+";i:11;s:9:"LSEI_1373";i:12;s:22:"Riboflavin transporter";i:13;s:9:"LSEI_1373";i:14;s:11:"Single gene";i:15;s:7:"1886943";i:16;s:9:"LSEI_1373";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1752375-1752472";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1751726-1752332";i:10;s:1:"-";i:11;s:9:"LSEI_1757";i:12;s:69:"Thiamine transporter ThiT (Thiamine ECF transporter S component ThiT)";i:13;s:9:"LSEI_1757";i:14;s:11:"Single gene";i:15;s:7:"1887045";i:16;s:9:"LSEI_1757";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1838210-1838385";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1836118-1837573";i:10;s:1:"-";i:11;s:9:"LSEI_1839";i:12;s:35:"Lysine:proton symporter; AAT family";i:13;s:9:"LSEI_1839";i:14;s:11:"Single gene";i:15;s:7:"1887086";i:16;s:9:"LSEI_1839";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2043181-2043279";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"2041748-2042402";i:10;s:1:"+";i:11;s:9:"LSEI_2055";i:12;s:25:"Predicted acyltransferase";i:13;s:9:"LSEI_2055";i:14;s:11:"Single gene";i:15;s:7:"1887181";i:16;s:9:"LSEI_2055";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2247747-2247841";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"2247191-2247710";i:10;s:1:"-";i:11;s:9:"LSEI_2252";i:12;s:65:"Folate transporter FolT (Folate ECF transporter S component FolT)";i:13;s:9:"LSEI_2252";i:14;s:11:"Single gene";i:15;s:7:"1887279";i:16;s:9:"LSEI_2252";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2429817-2429871";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2429251-2429662";i:10;s:1:"-";i:11;s:9:"LSEI_2442";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"LSEI_2442";i:14;s:6:"Operon";i:15;s:6:"228603";i:16;s:19:"LSEI_2441;LSEI_2442";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2430592-2430656";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2430714-2430801";i:10;s:1:"+";i:11;s:9:"LSEI_2444";i:12;s:0:"";i:13;s:9:"LSEI_2444";i:14;s:11:"Single gene";i:15;s:7:"1887371";i:16;s:9:"LSEI_2444";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008526.1";i:2;s:29:"Lactobacillus casei ATCC 334 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2818786-2818958";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2819070-2820669";i:10;s:1:"+";i:11;s:9:"LSEI_2837";i:12;s:124:"Amino acid ABC transporter substrate-binding protein; PAAT family / amino acid ABC transporter membrane protein; PAAT family";i:13;s:9:"LSEI_2837";i:14;s:6:"Operon";i:15;s:6:"228680";i:16;s:19:"LSEI_2837;LSEI_2838";i:17;s:40:"nitrogen compound transport [GO:0071705]";i:18;s:15:"View Structure ";}}
