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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
599672-599750
(-)
sam-alpha
598444-599629 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RL0554
Single gene
DOOR ID:
1872336
RL0554
(metZ)
View Structure
2
793210-793288
(-)
SAH
791484-792384 (+)
RL0743
Bifunctional protein FolD [Includes: Methylenetetrahydrofolate dehydrogenase ]
RL0743
Single gene
DOOR ID:
1872408
RL0743
View Structure
3
1773836-1773990
(+)
FMN
1774074-1774983 (+)
RL1692
Riboflavin transporter
RL1692
Single gene
DOOR ID:
1872900
RL1692
View Structure
4
2705470-2705558
(+)
glycine
2705718-2706855 (+)
gcvT
Putative aminomethyltransferase (Glycine cleavage system t protein) (0)
RL2572
Single gene
DOOR ID:
1873317
RL2572
(gcvT)
View Structure
5
2705562-2705642
(+)
glycine
2705718-2706855 (+)
gcvT
Putative aminomethyltransferase (Glycine cleavage system t protein) (0)
RL2572
Single gene
DOOR ID:
1873317
RL2572
(gcvT)
View Structure
6
2835994-2836182
(-)
cobalamin
2835265-2835904 (-)
RL2681
Putative oxidoreductase
RL2681
Single gene
DOOR ID:
1873378
RL2681
View Structure
7
2884220-2884370
(+)
FMN
2884496-2885132 (+)
ribA
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
RL2726
Single gene
DOOR ID:
1873408
RL2726
(ribA)
View Structure
8
2994281-2994678
(-)
cobalamin
2993580-2994096 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
RL2832
Operon
DOOR ID:
222007
RL2829
(cobO)
,
RL2830
(cobN)
,
RL2831
(cobW)
,
RL2832
(cobU)
View Structure
9
3216435-3216691
(-)
cobalamin
3215240-3216257 (-)
RL3052
Putative cationic solute-binding component of ABC transporter
RL3052
Operon
DOOR ID:
222039
RL3050,
RL3051,
RL3052
View Structure
10
3308358-3308500
(+)
FMN
3308577-3309012 (+)
ribH
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
RL3153
Single gene
DOOR ID:
1873625
RL3153
(ribH)
View Structure
11
4126231-4126306
(-)
cobalamin
4125969-4126179 (-)
RL3897
RL3897
Operon
DOOR ID:
222198
RL3895,
RL3896,
RL3897
View Structure
12
4518768-4518994
(-)
cobalamin
4518266-4518488 (-)
nrdH
Putative glutaredoxin-like protein
RL4261
Operon
DOOR ID:
222264
RL4259
(nrdE)
,
RL4260
(nrdI)
,
RL4261
(nrdH)
View Structure
13
4678113-4678226
(+)
TPP
4678938-4679745 (+)
RL4400
Putative transmembrane component of ABC transporter
RL4400
Operon
DOOR ID:
222292
RL4400,
RL4401,
RL4402
View Structure
14
4895351-4895428
(-)
sam-alpha
4894379-4895303 (-)
metA
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
RL4606
Single gene
DOOR ID:
1874281
RL4606
(metA)
View Structure
Genome:
Rhizobium leguminosarum bv. viciae 3841
(
NC_008380.1
);
Phylum:
Alphaproteobacteria
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[GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"793210-793288";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"791484-792384";i:10;s:1:"+";i:11;s:6:"RL0743";i:12;s:78:"Bifunctional protein FolD [Includes: Methylenetetrahydrofolate dehydrogenase ]";i:13;s:6:"RL0743";i:14;s:11:"Single gene";i:15;s:7:"1872408";i:16;s:6:"RL0743";i:17;s:189:"histidine biosynthetic process [GO:0000105]; methionine biosynthetic process [GO:0009086]; purine nucleotide biosynthetic process [GO:0006164]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1773836-1773990";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1774074-1774983";i:10;s:1:"+";i:11;s:6:"RL1692";i:12;s:22:"Riboflavin transporter";i:13;s:6:"RL1692";i:14;s:11:"Single gene";i:15;s:7:"1872900";i:16;s:6:"RL1692";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2705470-2705558";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2705718-2706855";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:71:"Putative aminomethyltransferase (Glycine cleavage system t protein) (0)";i:13;s:6:"RL2572";i:14;s:11:"Single gene";i:15;s:7:"1873317";i:16;s:12:"RL2572(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2705562-2705642";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2705718-2706855";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:71:"Putative aminomethyltransferase (Glycine cleavage system t protein) (0)";i:13;s:6:"RL2572";i:14;s:11:"Single gene";i:15;s:7:"1873317";i:16;s:12:"RL2572(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2835994-2836182";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2835265-2835904";i:10;s:1:"-";i:11;s:6:"RL2681";i:12;s:23:"Putative oxidoreductase";i:13;s:6:"RL2681";i:14;s:11:"Single gene";i:15;s:7:"1873378";i:16;s:6:"RL2681";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2884220-2884370";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2884496-2885132";i:10;s:1:"+";i:11;s:4:"ribA";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:6:"RL2726";i:14;s:11:"Single gene";i:15;s:7:"1873408";i:16;s:12:"RL2726(ribA)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2994281-2994678";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2993580-2994096";i:10;s:1:"-";i:11;s:4:"cobU";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:6:"RL2832";i:14;s:6:"Operon";i:15;s:6:"222007";i:16;s:51:"RL2829(cobO);RL2830(cobN);RL2831(cobW);RL2832(cobU)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3216435-3216691";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3215240-3216257";i:10;s:1:"-";i:11;s:6:"RL3052";i:12;s:61:"Putative cationic solute-binding component of ABC transporter";i:13;s:6:"RL3052";i:14;s:6:"Operon";i:15;s:6:"222039";i:16;s:20:"RL3050;RL3051;RL3052";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3308358-3308500";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3308577-3309012";i:10;s:1:"+";i:11;s:4:"ribH";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:6:"RL3153";i:14;s:11:"Single gene";i:15;s:7:"1873625";i:16;s:12:"RL3153(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4126231-4126306";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4125969-4126179";i:10;s:1:"-";i:11;s:6:"RL3897";i:12;s:0:"";i:13;s:6:"RL3897";i:14;s:6:"Operon";i:15;s:6:"222198";i:16;s:20:"RL3895;RL3896;RL3897";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4518768-4518994";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4518266-4518488";i:10;s:1:"-";i:11;s:4:"nrdH";i:12;s:34:"Putative glutaredoxin-like protein";i:13;s:6:"RL4261";i:14;s:6:"Operon";i:15;s:6:"222264";i:16;s:38:"RL4259(nrdE);RL4260(nrdI);RL4261(nrdH)";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4678113-4678226";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4678938-4679745";i:10;s:1:"+";i:11;s:6:"RL4400";i:12;s:51:"Putative transmembrane component of ABC transporter";i:13;s:6:"RL4400";i:14;s:6:"Operon";i:15;s:6:"222292";i:16;s:20:"RL4400;RL4401;RL4402";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008380.1";i:2;s:40:"Rhizobium leguminosarum bv. viciae 3841 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4895351-4895428";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4894379-4895303";i:10;s:1:"-";i:11;s:4:"metA";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:6:"RL4606";i:14;s:11:"Single gene";i:15;s:7:"1874281";i:16;s:12:"RL4606(metA)";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}}
