Genome: Roseobacter denitrificans OCh 114 (NC_008209.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 523505-523658 (-)cobalamin522161-522704 (+)RD1_0538

Hydrolase; putative		RD1_0538Single gene

DOOR ID: 1827338		RD1_0538 View Structure
2 540401-540502 (+)TPP540539-541520 (+)RD1_0557

Thiamin ABC transporter; periplasmic thiamin-binding protein		RD1_0557Operon

DOOR ID: 202991		RD1_0557,
RD1_0558 (thiP)		 View Structure
3 544358-544510 (-)FMN543830-544277 (-)ribH

6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)		RD1_0560Single gene

DOOR ID: 1827342		RD1_0560 (ribH) View Structure
4 720040-720143 (+)TPP720199-720979 (+)thiD

Phosphomethylpyrimidine kinase 		RD1_0746Operon

DOOR ID: 203026		RD1_0746 (thiD),
RD1_0747 (thiO),
RD1_0748 (thiS),
RD1_0749 (thiG),
RD1_0750 (thiE),
RD1_0751 (thiF),
RD1_0752,
RD1_0753 (tenA),
RD1_0754,
RD1_0755 (tenA),
RD1_0756		 View Structure
5 1187650-1187738 (+)glycine1187892-1189017 (+)gcvT

Aminomethyltransferase (0)		RD1_1222Operon

DOOR ID: 203118		RD1_1222 (gcvT),
RD1_1223 (gcvH),
RD1_1225 (gcvP)		 View Structure
6 1392877-1392965 (+)TPP1393009-1393297 (+)RD1_1468

RD1_1468Single gene

DOOR ID: 1827653		RD1_1468 View Structure
7 1847933-1848009 (+)sam-alpha1848070-1849252 (+)metZ

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) 		RD1_1939Single gene

DOOR ID: 1827817		RD1_1939 (metZ) View Structure
8 3351799-3352019 (-)cobalamin3351290-3351734 (-)RD1_3482

RD1_3482Operon

DOOR ID: 203559		RD1_3479,
RD1_3480,
RD1_3481,
RD1_3482		 View Structure
9 3473673-3473761 (+)TPP3473808-3474582 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		RD1_3610Operon

DOOR ID: 203587		RD1_3610 (thiM),
RD1_3611 (thiDE),
RD1_3612 (thiD),
RD1_3613 (tenA)		 View Structure
10 3633218-3633313 (-)fluoride3633010-3633139 (-)RD1_3747

RD1_3747Operon

DOOR ID: 203610		RD1_3744,
RD1_3746,
RD1_3747,
RD1_3748,
RD1_3749		 View Structure
11 3701322-3701518 (-)cobalamin3700854-3701232 (-)cobW

RD1_3829Operon

DOOR ID: 203630		RD1_3823 (cobJ),
RD1_3824 (cobI),
RD1_3825 (cobH),
RD1_3826 (cobG),
RD1_3827 (cobN),
RD1_3828 (cobW),
RD1_3829		 View Structure
12 3781742-3781791 (-)SAM-SAH3780555-3781737 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		RD1_3916Single gene

DOOR ID: 1828471		RD1_3916 (metK) View Structure