Genome: Yersinia pestis Nepal516 (NC_008149.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 80500-80762 (+)cobalamin80830-82726 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YPN_0057Operon

DOOR ID: 201267
YPN_0057 (btuB),
YPN_0058
View Structure
2 283231-283356 (-)TPP281051-283097 (-)YPN_0227

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YPN_0227Operon

DOOR ID: 201303
YPN_0222 (thiH),
YPN_0223 (thiG),
YPN_0224,
YPN_0225,
YPN_0226,
YPN_0227
View Structure
3 486265-486402 (-)TPP485197-486190 (-)tbpA

Thiamine-binding periplasmic protein
YPN_0397Operon

DOOR ID: 201335
YPN_0395 (thiQ),
YPN_0396 (thiP),
YPN_0397 (tbpA)
View Structure
4 627242-627431 (+)FMN627672-628326 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPN_0517Single gene

DOOR ID: 1823876
YPN_0517 (ribB) View Structure
5 1244213-1244276 (-)fluoride1243728-1244112 (-)YPN_1081

Putative fluoride ion transporter CrcB
YPN_1081Single gene

DOOR ID: 1824099
YPN_1081 View Structure
6 1452796-1452900 (+)TPP1453023-1453824 (+)YPN_1278

Phosphomethylpyrimidine kinase
YPN_1278Single gene

DOOR ID: 1824185
YPN_1278 View Structure
7 1686408-1686454 (-)mini-ykkC1686070-1686385 (-)Patl_1403

Patl_1403Single gene

DOOR ID: 1830855
Patl_1403 View Structure
8 2651885-2652084 (+)yybP-ykoY2652094-2652664 (+)YPN_2369

Putative manganese efflux pump MntP
YPN_2369Single gene

DOOR ID: 1824686
YPN_2369 View Structure
9 3199009-3199155 (-)MOCO3197461-3197941 (-)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPN_2841Operon

DOOR ID: 201800
YPN_2839 (moaE),
YPN_2840 (moaD),
YPN_2841 (moaC),
YPN_2842 (moaA)
View Structure